BAC Information

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BAC

Clone NameMSMg01-425G23
Chromosome9 (Build37)
Map Location 99,703,706 - 99,704,126
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
Downstream geneSox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425G23.T7 (MSMg01no425_g23.b1)MSMg01-425G23.TJ (MSMg01no425_g23.g1)
ACCAG519118AG519119
length824754
length of high quality
(start - end)
---400 (67 - 466)
definitionCHROMAT_FILE: MSMg01no425_g23.b1 PHD_FILE: MSMg01no425_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:39 2005CHROMAT_FILE: MSMg01no425_g23.g1 PHD_FILE: MSMg01no425_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCACCCATTTTTTGTTATCCCCCCTTCCAGGACCTTCATCTATGATGT
CCCACCCCTTTGAATATATGTCCTGTAGACTGGCTTAAAGACCTAACTTC
AGCGTGTTGTTTGTAGAGATTCCGATCTGGTGAGCGGCACAGCCTCGGAG
TAGTTTTATATCGAGCCGACATAGGTGAGGTTACCCTGAAACCTCATTCG
CCCTATGTCCATAGCCCAGCGTGATCCGTTTAAGGTGGTCAATGTAGTGA
TCCTTGTCTGACGGGCGGAATGGGTTTACCCCACGCCTCTTTGGGATATG
GGGTGATTATAAGGCGACGGCTCTCTATTCTGCTGTCAGTATGAGCTACG
TGAATGTGAACAATATAGGTTTTGCTGTTTGATGCTGAGAGCCAACCCGC
GAACATACGGTTCTCACTTGCATAGGTGGTACTTGCTCTGACGTCCGCGT
CTTATGTTTACGCCGCGCCGTGTGTTTCTTCTGACCTTCCATCGCCTTCT
CCTCTAATCCGGCTTGTCGTATTAGTTCATGTTTTTTTTGGTTCGTGTTG
TTTCGCTTTCATGCCTTGCTTTCTACATGTCTCCCCCCTCTTTTTTGTCG
AGATCGAAGCGGCTGCGCTTGCGTTTTTCATCCCCCCCCCGATTAATTTA
TTCCTTGCCCCCTACGCACCATTTGCGGATTAGGTAGATTTATTAACTAT
TCCTACGTTTATTTGTTTCGCCTTGGTCGCGACGTTAATCACTATTATTC
GGTACCGTACCTTTTTCGGAGTTTATTATTCACCCCATCGTCGGTTTACT
TCATTGTCTTCCCTCCCTAGTCAA
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGAGAGGGAAGTGATTTAGAGTCTTTTCCTCGA
GGATTGCCCAATGCTTTAAGAAAATACCTATTCCCAGCTGCACAGGTTAC
GCACATAAAATTTGCATATTGCAATAAATACTTGGCCCCATGAATTCCCA
GCCTGTTAAATAACAGGACTTAAAATGCTAGGTGAGCATGTAAAAGAAGA
CAGCATCATAGATACCAGAGAATTATAGGTTGGCGATTTTTTTTCTCCCT
TTGATCTTGCAACTTCCCCTTCCACCCCTGCCACGTGTAAGCCTGGTGGA
CTCTAAGACCTTGATTACTGGCGTTTGGTTTAGAACTTGGTGGACACCAA
CTTGGGTTATCTGCCCATGTCACAACTAGTCTCCCATTCCTATGAATGAC
TCCAGGTAACGGGGAGTACAGTTGGGGACTCTCTTGGTGCTATATGAGGG
TAGTAGGTTGAGAAGTAGAATCTGAATTTTTTTAAGGTTCTGAATTTTGA
CCTAAATGATCCTATATTCTTACAACTTGGAAGAATTGAAAGGGGTTAAC
ATTCTCAACGCCCCAAGGAAACCAATCCCTGTCCTTGCCATGGGTGAGAG
CCCTAAAGCCTTTTTCTGAATTCCCTTTGGAGACTCTAAAGTGTCTTTTT
TATCCCATAAAAAACACCCCCTCATCCCTCTCTACTTATTTTATTTATTC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_g23.g1 MSMg01no425_g23.g1 CHROMAT_FILE:
MSMg01no425_g23.g1 PHD_FILE: MSMg01no425_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:39 2005
         (400 letters)



>mm_chr9_99703633_99704433
          Length = 801

 Score =  710 bits (367), Expect = 0.0
 Identities = 398/421 (94%), Gaps = 21/421 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagagggaagtgatttagagtcttttcctcgaggattgcccaatgctttaagaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgagagggaagtgatttagagtcttttcctcgaggattgcccaatgctttaagaaaata 435

                                                                       
Query: 61  cctattcccagctgcacaggttacgcacataaaatttgcatattgcaataaatacttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctattcccagctgcacaggttacgcacataaaatttgcatattgcaataaatacttggc 375

                                                                       
Query: 121 cccatgaattcccagcctgttaaataacaggacttaaaatgctaggtgagcatgtaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cccatgaattcccagcctgttaaataacaggacttaaaatgctaggtgagcatgtaaaag 315

                                                                       
Query: 181 aagacagcatcatagataccagagaattataggttggcgattttttt-tctccctttgat 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 aagacagcatcatagataccagagaattataggttggcgatttttttctctccctttgat 255

                                                                       
Query: 240 cttgcaacttccccttccacccctgccacgtgtaagcctggtggactctaag-------- 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 254 cttgcaacttccccttccacccctgccacgtgtaagcctggtggactctaagactggagt 195

                                                                       
Query: 292 ------------accttgattactggcgtttggtttagaacttggtggacaccaacttgg 339
                       ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 194 cacgttttgcccaccttgattactggcatttggtttagaacttggtggacaccaacttgg 135

                                                                       
Query: 340 gttatctgcccatgtcacaactagtctcccattcctatgaatgactccaggtaacgggga 399
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gttatctacccatgtcacaactagtctcccattcctatgaatgactccaggtaacgggga 75

            
Query: 400 g 400
           |
Sbjct: 74  g 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 801
Length adjustment: 9
Effective length of query: 391
Effective length of database: 792
Effective search space:   309672
Effective search space used:   309672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)