BAC Information

Click to search

BAC

Clone NameMSMg01-426E12
Chromosome9 (Build37)
Map Location 17,146,605 - 17,147,071
singlet/doubletsinglet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426E12.T7 (MSMg01no426_e12.b1)MSMg01-426E12.TJ (MSMg01no426_e12.g1)
ACCAG519760AG519761
length851801
length of high quality
(start - end)		220 (39 - 258)466 (70 - 535)
definitionCHROMAT_FILE: MSMg01no426_e12.b1 PHD_FILE: MSMg01no426_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:46 2005CHROMAT_FILE: MSMg01no426_e12.g1 PHD_FILE: MSMg01no426_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AAACTATCCAAAAAGAGAAATAATCAAAGAAAAATGAGGCAATCAACTTG
AAAGTGGGGGACAGATATGGAAGGGATTCATAGACAGAGGAATGTGCAAG
GGAATGATGTAATTCTGTTTCCATTAAAAGCAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTTTTTTTTNNNNNNNNNNNTNTNNTNNNTTTTT
TTTTTTTTTTTTTTCTCTTTTTNTTTTNTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTCNTTCCTCCTCTTCTCTCCTTCCTCTCTTCCTCTCTT
TTTCTTCTCTCCTTTCTCTTCTTTCTCTCTTTCTTCCTCCTCCCTCTCTC
CTTCCTTCTCTCCCCTCTTCCTTCTCCTTCTCTTCCTCCTCTTCTTCTCC
TCTCTTCTTCCTTTCTTCTCCTCTCTCTCTCCTTCCCTCTTCCCTTCTCC
CTTTTCCCCTCTTTTCTCCTCCTCTTTTTTTCTCTCCTTTTCCTTTTTCT
CCTTCCCTTTCCCTCCCTCCTTTTCTTTCCTCCCTCCTTCTCTTTTCTCT
CCTTTCTCTTTCTCCCCTCCCTCTTTCTCTTTTCCTCCTTTTCCCCTCCT
CTCTTTTTCCTCTCCTCCCTCCTCCTTCCTCCTTCCCCTTCCTCCTTCTC
CTCCTCCCCCCTTTTCTCCTTTCTCTCTCTCTCCCTTTCTTTCCTTTCTC
T

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGGTGATAGCAATGTAAATACAAAATCCT
TGATTTGATTATCCTAACAATTCTGCAGTTTAAGAATAATAATTAGAGAG
GTTGGAATGGTTTTTAATCAAGGGGAAGTTATTGTGGGTCAGGAAGAGCA
GAGTTCTATTTAAGACCTATTTTGCCACATATTTTGATTTATAATTGAAA
ATGAAGAGTAAATATTTATGCAAATATGAAATTCAGAGCAGAATCCAGGG
AAAAGCTTATAAGCTTTAGACTAAAAATGTAATTTCATTTTTTAATTTGT
CATTCAGCAATATAAAATTTTTAAAGATGGATGTGCTGGTTTATAAAGCA
TTAAATTTTGTCTGAACATTTGATGCTAAAGGTCATAGAGCCTTTTGAAT
CTTTTTCAGAGATAACCAATGTTTGGATTTCATAATGATTAATATTGAGT
TCCACAGTACGAAATGGTAGAAGTATGTTTAGGGCCATTACAGAAAATGA
TAGAAACTTTTGTCTTATTGATAACCCCAAAGCAAAAGAACTGTGGTTGT
TCGTTTGCTTCCTTGGTATTCCCCCTCTCTTCCGGGCTTGTGCGAAAGTC
TGTTAGCCCATCCCGTCCTCTGGTCACTCTTTGTTGTTGCCTTTTCTTTT
CCTTTTAGGCCTGTCCTTTCTTCCATATTCTTTCCTTTTCTTTGCTTAGT
ACCTACCACTTCTCCCGTTTTTTTTTTCCCCGTTTTTTACCTCTTCCACG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_e12.g1 MSMg01no426_e12.g1 CHROMAT_FILE:
MSMg01no426_e12.g1 PHD_FILE: MSMg01no426_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:46 2005
         (466 letters)



>mm_chr9_17146405_17147271
          Length = 867

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%), Gaps = 1/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggtgatagcaatgtaaatacaaaatccttgatttgattatcctaacaattctgcagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 201 tctggtgatagcaatgtaaatacaaaatccttgatttgattatcctaataattctgcaat 260

                                                                       
Query: 61  ttaagaataataattagagaggttggaatggtttttaatcaaggggaagttattgtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagaataataattagagaggttggaatggtttttaatcaaggggaagttattgtgggt 320

                                                                       
Query: 121 caggaagagcagagttctatttaagacctatttt-gccacatattttgatttataattga 179
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 caggaagagcagagttctatttaagacctatttttgccacatattttgatttataattga 380

                                                                       
Query: 180 aaatgaagagtaaatatttatgcaaatatgaaattcagagcagaatccagggaaaagctt 239
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgaagagtaaatatttatgcgaatatgaaattcagagcagaatccagggaaaagctt 440

                                                                       
Query: 240 ataagctttagactaaaaatgtaatttcattttttaatttgtcattcagcaatataaaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagctttagactaaaaatgtaatttcattttttaatttgtcattcagcaatataaaat 500

                                                                       
Query: 300 ttttaaagatggatgtgctggtttataaagcattaaattttgtctgaacatttgatgcta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttaaagatggatgtgctggtttataaagcattaaattttgtctgaacatttgatgcta 560

                                                                       
Query: 360 aaggtcatagagccttttgaatctttttcagagataaccaatgtttggatttcataatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtcatagagccttttgaatctttttcagagataaccaatgtttggatttcataatga 620

                                                          
Query: 420 ttaatattgagttccacagtacgaaatggtagaagtatgtttagggc 466
           ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 ttaatattgagttccacagtatgaaatggtagaagtatgtttagggc 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space:   390792
Effective search space used:   390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |