BAC Information

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BAC

Clone NameMSMg01-426G10
Chromosome9 (Build37)
Map Location 116,389,775 - 116,442,626
singlet/doubletdoublet
Overlap genenone
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneRbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426G10.T7 (MSMg01no426_g10.b1)MSMg01-426G10.TJ (MSMg01no426_g10.g1)
ACCAG519852AG519853
length818780
length of high quality
(start - end)		281 (71 - 351)425 (70 - 494)
definitionCHROMAT_FILE: MSMg01no426_g10.b1 PHD_FILE: MSMg01no426_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:55 2005CHROMAT_FILE: MSMg01no426_g10.g1 PHD_FILE: MSMg01no426_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,442,348 - 116,442,626)(116,389,775 - 116,390,199)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTCCTCTTCCTGTGAAGACGGTTCTCAAATGCTGAGCCATTTCTCCAGC
CACTTCATTGCCTGTCACAGAGGCTTACAGCAGCCTGTGGTTGTGTCCGG
TACTTTTGCCTGTGTATTTATTTCCTCTGACTTTCCTAACTCCTCCTGAC
TTTAAGATCATGTTCTTTTAAGTACAGGTGAGTGAGTTTGTTTTTGGTTT
GTTCATCTGTCTGTCTGCCTGTCTGCTCATTTTACACTGCTGGAGTGTGG
AGTAAGGTGTGAAGTTCATTTTAAATCTTCTGTGTTTTTAAATATACTTA
TGTACCAGTTTTCCTCATATTCATTATCGATGACTAGGTTATGTGTTAAT
TATAATTGCTACGCCATGTGATGCATGTAATGTTATTTTATATTCCTTGA
TTTTGTTAAGACTATTTTGTTCCTAAGACTCTGTATTTATCTCTCCATCT
CTCTTTTTGTACATATTATTTTTCTTATCCTTTTTTTGTTTTTTATTCAA
CTTCTTCCACCATTCACTCTTATTTTTCTTTCTTGTTGCTTCCAGTCTTT
TTTATTTTTTTTTTCTTTATTCCTATTCTTTAAATACCTTTCTACCCTCA
TATATTATTTATTTTCTTTCACTCTCTTACCTACTCTATTTCCTATTTCT
CCTTCTACTCTCTCTCTTTAATACCTACAATAAATCCAACTTACCTACTA
CCCTATCTTTTTTATCATATATCATCTATCATCTTCTTTCTTTCTATTAC
AATCCATTTCTTACTTTG

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTGCAAAGAATGGAGGCTTTTAAAGATAG
CCAGGCCATTAAATCAAGCATGAAAACCATACCTAGCAATTTCACTTGCC
TGGACTGCAGATAAGCTGTGGTCTTGCTTACACTGTTTGCAAGGTTGCCC
AGACACTGGCAGGGCAGTCAATTTCCTAGATGTTGGATTCTTTTTCAGTG
CTTTGTGCTGTTTAAAGAGCTTATTTCTACTTCCAAGGCAGGCTCAGCAA
ACATTTCACTGCTTCCTGAAGGAAGGTGAAGGTTCTGTGGGTCTAGGGCA
CTTCAGAATTAGACGATCATTACATTTGGTCTCTCTTCCTCCCACAACAG
CATTTGAGTCAATGTTGATTTGCTCCTATAGAAAGGCACTAGAAATATAT
TGTATATAGGAGTCCTAATTTAATTTAAGGTGTTTAATAAAGCCACTGTA
TTCAGATGATCAGCCAGAATACAAAGCATTGCTTCAATTACCTCTTTATT
AACCTTATTTTTTAAATACTTGTTGTGTGTATGTCCACGTGATTGCATAA
ACAGTATCCATACCCCCTGTAGTTATATTTACTGTTGATTCCCCTTTTTT
CACCTGGCAGTACATCTTCTTTTTTTCTCTATTATCTATTCTTTTCCTTC
CCCCTCCCCTTTTTTCCCCTCTTCTCTTTCTATCTATTCCTACCTTTTCC
CCTTTTTCTTACCCTTTTTTCCTTTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_g10.b1 MSMg01no426_g10.b1 CHROMAT_FILE:
MSMg01no426_g10.b1 PHD_FILE: MSMg01no426_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:55 2005
         (281 letters)



>mm_chr9_116442147_116442827
          Length = 681

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   gttctcaaatgctgagccatttctccagccacttcattgcctgtcacagaggcttacagc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gttctcaaatgctgagccatttctccagccacttcattgcctgtcacagaggcttacagc 421

                                                                       
Query: 62  agcctgtggttgtgtccggtacttttgcctgtgtatttatttcctctgactttcctaact 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agcctgtggttgtgtccggtacttttgcctgtgtatttatttcctctgactttcctaact 361

                                                                       
Query: 122 cctcctgactttaagatcatgttcttttaagtacaggtgagtgagtttgtttttggtttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cctcctgactttaagatcatgttcttttaagtacaggtgagtgagtttgtttttggtttg 301

                                                                       
Query: 182 ttcatctgtctgtctgcctgtctgctcattttacactgctggagtgtggagtaaggtgtg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttcatctgtctgtctgcctgtctgctcattttacactgctggagtgtggagtaaggtgtg 241

                                                  
Query: 242 aagttcattttaaatcttctgtgtttttaaatatactta 280
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aagttcattttaaatcttctgtgtttttaaatatactta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no426_g10.g1 MSMg01no426_g10.g1 CHROMAT_FILE:
MSMg01no426_g10.g1 PHD_FILE: MSMg01no426_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:55 2005
         (425 letters)



>mm_chr9_116389575_116390399
          Length = 825

 Score =  814 bits (421), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgcaaagaatggaggcttttaaagatagccaggccattaaatcaagcatgaaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgcaaagaatggaggcttttaaagatagccaggccattaaatcaagcatgaaaacca 260

                                                                       
Query: 61  tacctagcaatttcacttgcctggactgcagataagctgtggtcttgcttacactgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctagcaatttcacttgcctggactgcagataagctgtggtcttgcttacactgtttg 320

                                                                       
Query: 121 caaggttgcccagacactggcagggcagtcaatttcctagatgttggattctttttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggttgcccagacactggcagggcagtcaatttcctagatgttggattctttttcagt 380

                                                                       
Query: 181 gctttgtgctgtttaaagagcttatttctacttccaaggcaggctcagcaaacatttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttgtgctgtttaaagagcttatttctacttccaaggcaggctcagcaaacatttcac 440

                                                                       
Query: 241 tgcttcctgaaggaaggtgaaggttctgtgggtctagggcacttcagaattagacgatca 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttcctgaaggaaggtgaatgttctgtgggtctagggcacttcagaattagacgatca 500

                                                                       
Query: 301 ttacatttggtctctcttcctcccacaacagcatttgagtcaatgttgatttgctcctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacatttggtctctcttcctcccacaacagcatttgagtcaatgttgatttgctcctat 560

                                                                       
Query: 361 agaaaggcactagaaatatattgtatataggagtcctaatttaatttaaggtgtttaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaaggcactagaaatatattgtatataggagtcctaatttaatttaaggtgtttaata 620

                
Query: 421 aagcc 425
           |||||
Sbjct: 621 aagcc 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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