Query= MSMg01no426_l05.b1 MSMg01no426_l05.b1 CHROMAT_FILE:
MSMg01no426_l05.b1 PHD_FILE: MSMg01no426_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:20 2005
(345 letters)
>mm_chr9_13831500_13832244
Length = 745
Score = 629 bits (325), Expect = 0.0
Identities = 337/345 (97%), Gaps = 8/345 (2%)
Strand = Plus / Minus
Query: 4 ggaattctcatg----gtttgccagaaaaggtgggaaaggggtaaatgaaaattaaaccc 59
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaattctcatgggaagtt----agaaaaggtgggaaaggggtaaatgaaaattaaaccc 508
Query: 60 aagtttgcatcctcaagtcttcctgcagtggaaactgtgctttgtacacagttagctgtt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagtttgcatcctcaagtcttcctgcagtggaaactgtgctttgtacacagttagctgtt 448
Query: 120 ctagtcacacaacatcactctggatattctgattgcatttctacatttgcatacatgtac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctagtcacacaacatcactctggatattctgattgcatttctacatttgcatacatgtac 388
Query: 180 atgtgcatttgtttatgtgtgtgggctcatgcaggtcaccggactcacatagaagtcctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgtgcatttgtttatgtgtgtgggctcatgcaggtcaccggactcacatagaagtcctg 328
Query: 240 ggacagcttgtacttgagttagtgctgaacaggttctcagaactgaagcttgcttctggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggacagcttgtacttgagttagtgctgaacaggttctcagaactgaagcttgcttctggc 268
Query: 300 agagagcacacaactgctcagtgtggagcttgaagctggacatct 344
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agagagcacacaactgctcagtgtggagcttgaagctggacatct 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_l05.g1 MSMg01no426_l05.g1 CHROMAT_FILE:
MSMg01no426_l05.g1 PHD_FILE: MSMg01no426_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:20 2005
(548 letters)
>mm_chr9_13616667_13617616
Length = 950
Score = 1048 bits (542), Expect = 0.0
Identities = 548/550 (99%), Gaps = 2/550 (0%)
Strand = Plus / Plus
Query: 1 cacgttcaattcccagcacccacatggcaggttactctaagctataactctagtcccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgttcaattcccagcacccacatggcaggttactctaagctataactctagtcccggg 260
Query: 61 ggacccaacaccctcttctggcccccgtgagtactaaaacagacaggacacacagacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacccaacaccctcttctggcccccgtgagtactaaaacagacaggacacacagacagg 320
Query: 121 caaaacacccatatccatgtttaacaggaaataaaaaaagctaaagatactgaaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaacacccatatccatgtttaacaggaaataaaaaaagctaaagatactgaaaatatt 380
Query: 181 ttaaacataaaaacaatagctacaactcaccgttccagcaacaaaaggcatatcacctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaacataaaaacaatagctacaactcaccgttccagcaacaaaaggcatatcacctaa 440
Query: 241 gcacaatctgtaatgtggctgtgcaccaaaataggtcctagaacctttctggatggagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacaatctgtaatgtggctgtgcaccaaaataggtcctagaacctttctggatggagaa 500
Query: 301 aaaagaaaatcattttattttattttggtgagctaatccaagactccagctcactgtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagaaaatcattttattttattttggtgagctaatccaagactccagctcactgtgga 560
Query: 361 actactgggtaccttggtgtaccactcttttttt-cctgcagaaaccaggcttcaagaag 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 actactgggtaccttggtgtaccactcttttttttcctgcagaaaccaggcttcaagaag 620
Query: 420 ttacttggcccagagtttaataagataaaactcattatggaaaaagcatggcaaccatag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacttggcccagagtttaataagataaaactcattatggaaaaagcatggcaaccatag 680
Query: 480 gtctgggaatgggtgtgtattcatcacactgtaccatcagtcaagaa-taaagatagagg 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 gtctgggaatgggtgtgtattcatcacactgtaccatcagtcaagaagtaaagatagagg 740
Query: 539 acaggaaaag 548
||||||||||
Sbjct: 741 acaggaaaag 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 950
Length adjustment: 10
Effective length of query: 538
Effective length of database: 940
Effective search space: 505720
Effective search space used: 505720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
