BAC Information

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BAC

Clone NameMSMg01-427J05
Chromosome9 (Build37)
Map Location 30,948,225 - 30,948,687
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14
Downstream geneAplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427J05.T7 (MSMg01no427_j05.b1)MSMg01-427J05.TJ (MSMg01no427_j05.g1)
ACCAG520743AG520744
length1,093764
length of high quality
(start - end)		---463 (82 - 544)
definitionCHROMAT_FILE: MSMg01no427_j05.b1 PHD_FILE: MSMg01no427_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:29 2005CHROMAT_FILE: MSMg01no427_j05.g1 PHD_FILE: MSMg01no427_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGAAGAGACCATTGCGGATNCGTTCAATAAACCAATCTAATATTA
CAAATCGATTAGATGAACAATTCGCATTAAATAATAATTTCACAAAAGTA
TTTATATCTATATGTAAATTGTAGATTATTTATATAGAGGAAATATAATT
AGTTAATAATTATTTTAGTATCAGTTATTACTCCTGTTATAATTAAATAC
AACACTCAAAATAGCATTAGCATTTATCGTTTTCTAGTAATCTAAACACT
TACCGAGTACCAAATCGTAATAGTTTTTATTTGTCTGGTGTTGGTTGACG
GGAGAGTAGATTGTGTCTATTAAAACTTCAACAAGATAAAATTACCATAT
TTCTCTCTCAAACCATCTTAATACACCTGATCTATTAGTATGGTAACTAA
TTATCAACTCTCCTTAAACACCCAAAAAAACTCTAAACCTTAAATTTAAA
CATTTACTAAAACAACGACAATTATCTACTTTACGCCATATGTTCATTTC
CCTCCACAATCGCCCCCCTCACCCTTCTTTGCCTCACACACACCACCTCA
CCAACGTAAGAATAACACGTATACCTATTCAAATAAGACTTCATAAATAT
TTCCTACCCCCCAGAAACCATACACTTTACCAACACACACCACTTTAATC
ATCACTACCAAACTTCCTACGTCACTTTATAACACATTAATCCTCTCATA
TTATTATATTATATTCTTGAACACACACTTCTATTATCTTTTCCGCCGAC
ATAGACATACAAATAAGATTCTACCATACCTTAACATATTATATATAACA
CTTCACCCCATTCTTTACTATTCCTATTTTTACTCTTCTAATTTCCAACT
CCAATTCACAAATATTACAACATATAATAAATTATTTAAATTCATATTAA
CGTCATAATCCTACCATGAATCCAAAGTATCGAATTACTACCCATTTCTT
GTTGATTTATAAGTATTCTCCGTACCCTGTTATCCATACCTCTATTCTCC
TTACTCATTTTACGAATTGCGCCTATCACNACTGATAAAATATTTATACG
TCNTTNCAAACACATATCAACATCAATATATTTACCTTCTCGG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTTTATCTATACATAC
ACAAGCACTGTGAGACATGCCAGGAGAGACTTTCAAGAGAAAGCAAAGAA
AGGGTTCAGGTGCTCAGATAATCTGCTTTTTGAGAGTTAAAGGAAGACAC
TCCTGGTGGTGAGGGCAACAATGGCATCCTGGCTGGGGTGGAGATTCTGG
ACTCTGCATGATGAACTGTAGTGGTAGGAGCAGAAGGGACTTTCGATGTG
GTTTTCAATGTGGTGGGTCTTGTTCTTGGCTGTTCCTGCCCTTCTTGCCT
CTCTGACTCTCTTAAGACAGAGTGTGCCGGGCAGTGGTGGCACACACCTT
TAATCCCAGCACTTGGGAGGCAGAGGCGGGCAGATTTCTGGGTTTGAGGC
CAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAA
ACCAGGACTGTATTATAAAACAACAGCAACAACAACAAGAAGACAGAGTG
TGACTTTTAGGGTCATTTAATAATCCCCTCCCCCGAAGAGTGGAAACAGA
ATTAAATGAAGTGGGAGATGGGAAAGCAAGGTGAAAGGAAAAAGGCTAGG
GAAAGGATAAAAAAGCTAAAGAATCCTGTAAATTGCTTATTGGCAATTGA
AAAATGGAGAAAATTTTCTTAAATTTTTTAACTAATTCTGGGGATTCTTT
ATGGACTATTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_j05.g1 MSMg01no427_j05.g1 CHROMAT_FILE:
MSMg01no427_j05.g1 PHD_FILE: MSMg01no427_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:29 2005
         (463 letters)



>mm_chr9_30948194_30949056
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtttatctatacatacacaagcactgtgagacatgccaggagagactttcaagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atggtttatctatacatacacaagcactgtgagacatgccaggagagactttcaagagaa 435

                                                                       
Query: 61  agcaaagaaagggttcaggtgctcagataatctgctttttgagagttaaaggaagacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agcaaagaaagggttcaggtgctcagataatctgctttttgagagttaaaggaagacact 375

                                                                       
Query: 121 cctggtggtgagggcaacaatggcatcctggctggggtggagattctggactctgcatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctggtggtgagggcaacaatggcatcctggctggggtggagattctggactctgcatga 315

                                                                       
Query: 181 tgaactgtagtggtaggagcagaagggactttcgatgtggttttcaatgtggtgggtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgaactgtagtggtaggagcagaagggactttcgatgtggttttcaatgtggtgggtctt 255

                                                                       
Query: 241 gttcttggctgttcctgcccttcttgcctctctgactctcttaagacagagtgtgccggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gttcttggctgttcctgcccttcttgcctctctgactctcttaagacagagtgtgccggg 195

                                                                       
Query: 301 cagtggtggcacacacctttaatcccagcacttgggaggcagaggcgggcagatttctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cagtggtggcacacacctttaatcccagcacttgggaggcagaggcgggcagatttctgg 135

                                                                       
Query: 361 gtttgaggccagcctggtctacagagtgagtttcaggacagccagggctacacagagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gtttgaggccagcctggtctacagagtgagtttcaggacagccagggctacacagagaaa 75

                                                      
Query: 421 ccaggactgtattataaaacaacagcaacaacaacaagaagac 463
           ||||| |||||||| |||||| || ||||||||||||||||||
Sbjct: 74  ccagggctgtattaaaaaacagcaacaacaacaacaagaagac 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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