BAC Information

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BAC

Clone NameMSMg01-427O13
Chromosome9 (Build37)
Map Location 37,663,083 - 37,663,660
singlet/doubletsinglet
Overlap geneOlfr877
Upstream geneFez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876
Downstream geneOlfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427O13.T7 (MSMg01no427_o13.b1)MSMg01-427O13.TJ (MSMg01no427_o13.g1)
ACCAG520997AG520998
length764745
length of high quality
(start - end)		387 (55 - 441)578 (84 - 661)
definitionCHROMAT_FILE: MSMg01no427_o13.b1 PHD_FILE: MSMg01no427_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:55 2005CHROMAT_FILE: MSMg01no427_o13.g1 PHD_FILE: MSMg01no427_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTGTATTCTTATGTTGTGGATGTGTCTGTTGAGGT
TGGGCTTCCCAAAGTTGTGATCCATTGATCTCTGTATTGTGTCCAGTTGT
GATTTTCTGTAGTGGCTTCCATTTGTTGTAAAGAGCAGCTTCTTTGATGA
GAGGTAAGTGTTATACTTATCTGTGGGTATAAGGATGAGCTTTGGAATGT
ATTAGTAATGCATTAGGAATTATGTATTAGGAATTATGCTCAGCTAGTAA
AGTGGTGGTAATAGGTTCATTGTAAGATCTTTGACCTCATTAGTCCCAAG
TAAGTAATAATAATTAAAGTATGCCACTAATTTGAGAGGAAGTCAGGGAA
TGATGTAGGAAGGGTTAGAGAATGGAGGAGAATGGGAGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTNNNNNNNNNNNNNNNNNN
NNNNNNNTNNNNNNNTNNNNNNNNNNNNNNTNNTNTNNTTTTTTNNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTNNTTTTTT
TTTTTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNNNNNT
NNNNTTTTTTTTTTTTTNTTTTTNNNTTTTTTTTTTTTTTNTTTTTTTTT
NTTTTNNNTTTTTN

NNNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGCCTGTATTTCAG
TGCCAGCTCAAGTATGAGGAACGTGTACATCTGTAGGTGCCATGTAAAAC
CTTTAGAAATCACAGTGTGAAGCACCTTATATGAAATTGTTACATTAGGT
TACTTTTAAGGTATATTTTATCATTATGAAAACAATATCTACAAAAGGAA
GACTAATTGAGACAGGTGACTGGGCAGATTTAAATATTCTTTAAAACAAG
ATTTGGTTTTCCTGCTGTTATAACACTGCCTTTTATTTCCTTTACTAAGA
AATAATATTTTTTAAATCTTAATAAAGCTTTGGGTGTTATTTCTAAAGTA
CTTTTAAGAGAAATTTTTTCTGCTCAAGGTTTTCTTCAGAGCAATTTTGA
CATCCTTATTCCTCAGGCTATAGATTAATGGATTGAACATGGGCACCACA
GCGGTGTAGAAAACAGAGGATACTTTTCCCTGATCCAGAGGCAAACTAGA
AGGTGGTTTGAGGTACATAAAAGCTCCTGACCCAAAAAAGAGAGACACTA
CAATAATATGGGACGTACATGTACTAAAGGCTTTCGACCTGCCTTCTTTA
GAACTAATGTGGAGAATGCTAGAGAGGATGAAACCATAAGATATAAAAAT
GGTAACAATGGGCACTCCAATGCCAATGGTCACCACAATAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_o13.g1 MSMg01no427_o13.g1 CHROMAT_FILE:
MSMg01no427_o13.g1 PHD_FILE: MSMg01no427_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:55 2005
         (578 letters)



>mm_chr9_37662883_37663860
          Length = 978

 Score = 1056 bits (546), Expect = 0.0
 Identities = 570/578 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggcctgtatttcagtgccagctcaagtatgaggaacgtgtacatctgtaggtgccat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 778 aagggcctgtatttcagtgccagctcaagtatgaggagcgtgtacatctgtaggtgccat 719

                                                                       
Query: 61  gtaaaacctttagaaatcacagtgtgaagcaccttatatgaaattgttacattaggttac 120
           |||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||
Sbjct: 718 gtaaaacctttagaaatcacagtgtgcagaaccttatatgaaatggttatattaggttac 659

                                                                       
Query: 121 ttttaaggtatattttatcattatgaaaacaatatctacaaaaggaagactaattgagac 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 ttttaaggtatattttatcattataaaaacaatatctacaaaaggaagactaattgagac 599

                                                                       
Query: 181 aggtgactgggcagatttaaatattctttaaaacaagatttggttttcctgctgttataa 240
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 598 aggtgactgggcagattgaaatattcttaaaaacaagatttggttttcctgctgttataa 539

                                                                       
Query: 241 cactgccttttatttcctttactaagaaataatattttttaaatcttaataaagctttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cactgccttttatttcctttactaagaaataatattttttaaatcttaataaagctttgg 479

                                                                       
Query: 301 gtgttatttctaaagtacttttaagagaaattttttctgctcaaggttttcttcagagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtgttatttctaaagtacttttaagagaaattttttctgctcaaggttttcttcagagca 419

                                                                       
Query: 361 attttgacatccttattcctcaggctatagattaatggattgaacatgggcaccacagcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 attttgacatccttattcctcaggctatagattaatggattgaacatgggcaccacagcg 359

                                                                       
Query: 421 gtgtagaaaacagaggatacttttccctgatccagaggcaaactagaaggtggtttgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgtagaaaacagaggatacttttccctgatccagaggcaaactagaaggtggtttgagg 299

                                                                       
Query: 481 tacataaaagctcctgacccaaaaaagagagacactacaataatatgggacgtacatgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tacataaaagctcctgacccaaaaaagagagacactacaataatatgggacgtacatgta 239

                                                 
Query: 541 ctaaaggctttcgacctgccttctttagaactaatgtg 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctaaaggctttcgacctgccttctttagaactaatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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