BAC Information

Click to search

BAC

Clone NameMSMg01-428A14
Chromosome9 (Build37)
Map Location 58,803,947 - 58,804,372
singlet/doubletsinglet
Overlap geneNeo1
Upstream geneSema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4
Downstream geneLOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428A14.T7 (MSMg01no428_a14.b1)MSMg01-428A14.TJ (MSMg01no428_a14.g1)
ACCAG521095AG521096
length769760
length of high quality
(start - end)
145 (73 - 217)426 (78 - 503)
definitionCHROMAT_FILE: MSMg01no428_a14.b1 PHD_FILE: MSMg01no428_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:05 2005CHROMAT_FILE: MSMg01no428_a14.g1 PHD_FILE: MSMg01no428_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCAATAATTTGCGGTCGCTAAACGACTCACATACAATACAGGATCCGC
GGAATTCACTGTTTTATGTTCCCAGCCATGTCCTCTGTTACTTGAAGTCT
TTGTCAGGGTTACTTTTGCTGTGATGAACCACCATGGTCAAAAGCAAGTT
GAGGAGGAAGAGGTTTATTTCAGTTCTACTTCAGTGTAGTGGTACCTCAT
CAGCGTCAGTCCGGGCAGGAAATTAAACAAGGTATGACCTATAGAGAGGT
GCTGAAGCCATGGTGGAGTGCTGCTTACTGGCTGCTCATCCTGCGTTCTT
ATAACCCTCAGGACTTTTTTTTTTTAGGGGTCCCCACCCACTATGCACTG
GGCCTGCTCTCTTCTCTTACTAATTAAGAAAATGTCCTACTGGCTTGCCT
ATAACCCAACCTTAATGTGACATTTTCTTTACTGAGGTTTCCTCCTCTCT
GATGATTTTTTGTTTGTGCCCGTTGACTTTTAATTTATCTTGGTCCATTT
GTTCTTTTGTACGTCTTTTGGTTCCCTTTGCACCTTCTGAATGTACTATT
TGCGCCCTTTTCACCCTCCGTATGGCCTTTTTGTTCTATATTTTTATCCA
CTCTCTCGTCGCTGACTTACTGATCCTTTTTTTCCCCTTTTTTTTCCCGA
TCTGCTTTTTCTTTTATCCTTTATTTTCCCTCACTTTTATCGCTATCACT
TGCATTCTATCCCCTTTTCCTATTTGCCGCCTCTTACCCATTTCCCATAC
TTTTTTCTTTCCCCCCCCT
CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTCAAAATTGCATTTTAATT
CTATATATGTTAGGTATATAGTAGATATTATTGCCTACTAATATTATCAT
TTTCTAATATCAAACAAACAGGATTATTTAGGTTTTAGTAATAAGTATGA
ATGGCATACCTTAAGATCTTTACTCAAAACTTATTAAAAAGCTCAGAAGT
AATTATAGTGTTTTAAAGACAGTGTCATTTTGAAAATTTGTCATGCAAGT
AATTCATTTTTGTGGGAGTGTTTCTAAAATGCATAATCTCATGTTAACAA
AAAGTAGTTCTGAGTACTTAACATTAAAACCAATCTGTTGTGATTAAATT
AGCATTTTTAGTTTATCATTATTTATATGCTGTTTTTTAAATTTTAAAGC
AACATTTATGCTAATAACAATATTTCTTCCTTCTCTTTGAGAACATATCC
TTGAGGCCTTAAAGTCATGTTTATCAATTAAGACATAACATTTTATATGT
TTTTCTTCCTTACAACGAACATAATCTTCAAGTTTTGGTCCTGGCGAACC
CATATGAAGGGTTCTATCATTGCCCTGTTTGAGAATGATGTTCGAAATGT
TTTATGCTGGTATTCCAGCCCGATCTTCTTTGAATTTGCCTTTTACCGCC
ACTCGCCATTTATTCTGATATTACCTTCGCACTGTTTTTCCTCCGCTTAT
CCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_a14.g1 MSMg01no428_a14.g1 CHROMAT_FILE:
MSMg01no428_a14.g1 PHD_FILE: MSMg01no428_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:05 2005
         (426 letters)



>mm_chr9_58803747_58804572
          Length = 826

 Score =  770 bits (398), Expect = 0.0
 Identities = 419/426 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtcaaaattgcattttaattctatatatgttaggtatatagtagatattattgccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttgtcaaaattgcattttaattctatatatgttaggtatatagtagatattattgccta 567

                                                                       
Query: 61  ctaatattatcattttctaatatcaaacaaacaggattatttaggttttagtaataagta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctaatattatcattttttaatatcaaacaaacaggattatttaggttttagtaataagta 507

                                                                       
Query: 121 tgaatggcataccttaagatctttactcaaaacttattaaaaagctcagaagtaattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgaatggcataccttaagatctttactcaaaacttattaaaaagctcagaagtaattata 447

                                                                       
Query: 181 gtgttttaaagacagtgtcattttgaaaatttgtcatgcaagtaattcatttttgtggga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgttttaaagacagtttcattttgaaaatttgtcatgcaagtaattcatttttgtggga 387

                                                                       
Query: 241 gtgtttctaaaatgcataatctcatgttaacaaaaagtagttctgagtacttaacattaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 386 gtgtttctaaaatgcataatctcatgttaacaaaaagtagttctaagtacttaacattaa 327

                                                                       
Query: 301 aaccaatctgttgtgattaaattagcatttttagtttatcattatttatatgctgttttt 360
           ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct: 326 aaccaatctgttgtgattaaattagcatttttattttatcattgtttatatgttgttttt 267

                                                                       
Query: 361 taaattttaaagcaacatttatgctaataacaatatttcttccttctctttgagaacata 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 taaattttaaagcaacatttatgctaataacagtatttcttccttctctttgagaacata 207

                 
Query: 421 tccttg 426
           ||||||
Sbjct: 206 tccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)