BAC Information

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BAC

Clone NameMSMg01-428C20
Chromosome9 (Build37)
Map Location 113,569,959 - 113,570,181
singlet/doubletsinglet
Overlap genePdcd6ip
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680
Downstream geneClasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428C20.T7 (MSMg01no428_c20.b1)MSMg01-428C20.TJ (MSMg01no428_c20.g1)
ACCAG521203AG521204
length774806
length of high quality
(start - end)
244 (72 - 315)223 (73 - 295)
definitionCHROMAT_FILE: MSMg01no428_c20.b1 PHD_FILE: MSMg01no428_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:17 2005CHROMAT_FILE: MSMg01no428_c20.g1 PHD_FILE: MSMg01no428_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAACGGAGCCGCGGAA
TTCTATCAGTCTCAAAAAGAGACCTAATACCAATACTCTTCAAACAATTT
CACAAAATAGAAACAGAAGGAACACTATCCAATTTATTCTATAAAGCTAC
AATTATGCTTATACCTAAACCTCACAAAGACCCAACAAAGAAAGAGAACT
TCAGACCAGTTTCCCTTATAAATATCAATGCAAAAATACTCAATAAAATT
CTCACAAACTGAATCCAAGAACACATCAAAATGATCATTCACCACGATCA
AGTAGGCTTCATCTTGCGTAGTTAGGGGTGGCTCAATGTATGGAAATCCA
TCAATGTAATCCACTATATATATATAAAAAAAAAAAACCTCTAAGACAAA
AACTACATGATCGTCTCATTAGATGTTGAGAAAGCATTTAACAAAATTCA
ACATCCCTTCATGGTAAATGTCTGTGAAAGATCAGAAATTCCAGGCCCAT
ACCTAAACATTAGACAAGCAATATACTACTAACCAGTAGTCCACTTCTTA
TTAAATGGAGACAAACTTGAAGCAATCCCACTAAAATCAGGTACTTACAC
AAGGCCACCCACTCTCTCCATAGCTTTTTTCATATATTTACTCCCAGTTC
TATCTTTTATATTTTAAACCAAAAACAGGAGGTCAAATGGGATTATCAAT
GAGAAATGGATTAAGTCCCAATTATCACTTTACCCGCCGGTCAAATTGCA
CAGTTATTTTTCAATCTGCCCCCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTACCAGAAGAATTCTCCAAAATGAAGCAATCTAACAACGAG
GCTAACTTGAGAGAAGAAGTTCTGAAGAACCTAGCAACTGCGTATGACAA
CTTTGTTGATCTTGTAGCTAACTTGAAGGAGGGCACAAAGGTATGTGTGC
ACACAGGAGAGACTACAGCTGATGAGTAAGGATTGGAAAGGAGTGGTCTC
TGCTGCTATTTCCAAGTAATCAAGCTTTGTGCTTTTGACTTGGTTTTAGC
GCCTTCTGCTTCTTTCGTGCTTGTAGAGGGAGAACTCTTAGCGGAGGCAG
CAGCATCTTAGTGGAGCTCTGAAAAGCCAGCTTTGCATAGAGGGGCTTAG
TGTGTTGTACGTACCGAGAATCTTACCTATCTTAACCCTGCGAGACATCT
TAAGGGTTATTTGGGACTGATGTCTGTAGGAGAGATATTCCCGCCCTTTT
TGTCTCTTCTTCGTTCGCTTTGCTGTTGTGTATATCTATCTACTCCTTAC
CTGTCCCGTTCTTCCCCATTCTTTCCTCCGCGCTCTTCCCTTCTTTTCCC
CCCTTCTTACCCCTCCCCCTCTCTTCCTCCTTTTATTTTTTTCCGCACAC
TATCTATTCTCCCCTTTTCCTTTTTCTTCTTTACTCCTCCCTTTCCTCCT
CCCCTTTCTTTTCTTTTTTTTTTTATTTTTTCCCCTCACGTTCTACCATA
TTTTACTTTTTTTCACCACCCAAAATATACTTTTCTCCCTCCTCTCCTTC
TTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_c20.g1 MSMg01no428_c20.g1 CHROMAT_FILE:
MSMg01no428_c20.g1 PHD_FILE: MSMg01no428_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:17 2005
         (223 letters)



>mm_chr9_113569759_113570381
          Length = 623

 Score =  400 bits (207), Expect = e-116
 Identities = 219/223 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccaaaatgaagcaatctaacaacgaggctaacttgagagaagaagttctgaagaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctccaaaatgaagcaatctaacaacgaggctaacttgagagaagaagttctgaagaacct 364

                                                                       
Query: 61  agcaactgcgtatgacaactttgttgatcttgtagctaacttgaaggagggcacaaaggt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 363 agcaactgcgtatgacaactttgttgagcttgtagctaacttgaaggagggcacaaaggt 304

                                                                       
Query: 121 atgtgtgcacacaggagagactacagctgatgagtaaggattggaaaggagtggtctctg 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 303 atgtgtgcacacaggagagactagagctgatgagtaaggattggaaaggagtggccactg 244

                                                      
Query: 181 ctgctatttccaagtaatcaagctttgtgcttttgacttggtt 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgctatttccaagtaatcaagctttgtgcttttgacttggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)