Query= MSMg01no428_j15.b1 MSMg01no428_j15.b1 CHROMAT_FILE:
MSMg01no428_j15.b1 PHD_FILE: MSMg01no428_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:50 2005
(244 letters)
>mm_chr9_116536413_116537057
Length = 645
Score = 426 bits (220), Expect = e-124
Identities = 238/244 (97%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 cgtttctcaatctttcattttattaatatgcaatctttttttgacaaatgtcaaatcttt 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cgtttctcaatctttcattttattaatatgtgatctttttttgacaaatgtcaaatcttt 260
Query: 61 ctcccgcttgtcagaaattctgatgaccttgtcaaactgtgagacccactgatacacaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ctcccgcttgtcagaaattctgatgaccttgtcaaactgtgagacccactgatatacaga 320
Query: 121 acattgactaaactttctgcatatcttttataggcaaagcat-ctcagagatcttacttt 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 acattgactaaactttctgcatatcttttataggcaaagcattctcagagatcttacttt 380
Query: 180 tattttaaagacagtgtatttattttctagtcataaagccagattgtcctaggaaataga 239
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 381 tattttaaagacagtgtatttattttctagacataaagccagattgtcctaggaaacaga 440
Query: 240 cttg 243
||||
Sbjct: 441 cttg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no428_j15.g1 MSMg01no428_j15.g1 CHROMAT_FILE:
MSMg01no428_j15.g1 PHD_FILE: MSMg01no428_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:50 2005
(437 letters)
>mm_chr9_116700951_116701789
Length = 839
Score = 748 bits (387), Expect = 0.0
Identities = 424/437 (97%), Gaps = 2/437 (0%)
Strand = Plus / Minus
Query: 1 aataactctgtaagagttattgtcctaaaacaatgag--aaaaaaaatataaccagcctt 58
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 637 aataactctgtaagagttattgtcctaaaacaatgagaaaaaaaaaatctaaccagcctt 578
Query: 59 ggtaactcttggtataataaaaatgtaaatcttttcctttacaatgagtcagccaggata 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 577 ggtaactcttggtataataaaaatgtaaatcttttcctttacaatgagtcagccaagata 518
Query: 119 aagctgagtttaagatacttttttaaaaatcgtattttgataaactagttatattctaga 178
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 517 aaactgagtttaagatacttttttaaaaatcatattttgataaactagttatattctaga 458
Query: 179 atgctatttaaggggaaaattaagggtgtaaactaatttcagtatgtcacagtactgttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgctatttaaggggaaaattaagggtgtaaactaatttcagtatgtcacagtactgttt 398
Query: 239 tgtattttctagtgtgcatgtaacagtcttatttttatcaaatgtaaatgctgtagcgac 298
||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 tgtataaacaagtgtgcatgtaacagtcttatttttatcaaatgtaaacactgtagcgac 338
Query: 299 tttgaaaacatttacattaccatttttattagtaaatagcacagtgcttgacagaacgta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttgaaaacatttacattaccatttttattagtaaatagcacagtgcttgacagaacgta 278
Query: 359 cgagtgtctcatgaagggtgtagagacagcatggaggacttgtggagaaggaactgagat 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 277 cgagtgtctcatgaagggtgtagagacagcatggaggacttgtggagagggaactgagat 218
Query: 419 acgtttttaatgaccag 435
|||||||||||||||||
Sbjct: 217 acgtttttaatgaccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 839
Length adjustment: 9
Effective length of query: 428
Effective length of database: 830
Effective search space: 355240
Effective search space used: 355240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
