Query= MSMg01no429_j18.b1 MSMg01no429_j18.b1 CHROMAT_FILE:
MSMg01no429_j18.b1 PHD_FILE: MSMg01no429_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:09 2005
(528 letters)
>mm_chr9_107894318_107895248
Length = 931
Score = 901 bits (466), Expect = 0.0
Identities = 507/528 (96%), Gaps = 13/528 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagactctgtggggaagcaggtcttggggctaattttcctgggcactgggtttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagactctgtggggaagcaggtcttggggctaattttcctgggcactgggtttg 263
Query: 64 ctctgtctgcaagcacattgtggccagttttaccatctgtagcttgtatccccttagggt 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctgtctgcaagcacaatgtggccagttttaccatctgtagcttgtatccccttagggt 323
Query: 124 tgcagtaatgaatggaagaattcactggaaacagcggaagatgggattttccagcagctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcagtaatgaatggaagaattcactggaaacagcggaagatgggattttccagcagctc 383
Query: 184 ccggagcctgccggggatctaactgctctgtcatggggtaggtggagccagagctggagt 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggagcctgccggggatctaactgctctgtcatggggtaggtggagccagagctggagt 443
Query: 244 ctcggaagccacctgatggctatgtttaagcttctagccaggcaaca---gagttagcct 300
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 444 ctcagaagccacctgatggctatgtttaagcaactagccaggcaacaacagagttagcct 503
Query: 301 gagaaacagcttcctccaccatttctttagcctaccatggcactgctcaggctcctggag 360
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 504 gagaaacagcttcctccaccatttcttcaggctaccatggcactgctcaggctcctggag 563
Query: 361 tttctttttgctttacttatccctggtaaggagcagtcagatgtgtgtgtatgtgtgtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttctttttgctttacttatccctggtaaggagcagtcagatgtgtgtgt---------- 613
Query: 421 gggggaccccagtctggcagtgaagttctgacctgtagataagctaatgtggagggcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gggggaccccagtctggcagtgaagttctgacctgtagataagctaatgtggagggcaga 673
Query: 481 ggctaaggaacccctgacccttgctccttctcttggctctttcttcag 528
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 674 ggctaaggaacccctgacccttgctccttctcttggctgtttcttcag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 931
Length adjustment: 10
Effective length of query: 518
Effective length of database: 921
Effective search space: 477078
Effective search space used: 477078
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_j18.g1 MSMg01no429_j18.g1 CHROMAT_FILE:
MSMg01no429_j18.g1 PHD_FILE: MSMg01no429_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:09 2005
(387 letters)
>mm_chr9_108079114_108079900
Length = 787
Score = 646 bits (334), Expect = 0.0
Identities = 337/338 (99%)
Strand = Plus / Minus
Query: 1 actgatgtaggctggactccaggctccacttagtgtgtgcttcatcctccctgggcagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actgatgtaggctggactccaggctccacttagtgtgtgcttcatcctccctgggcagca 279
Query: 61 ggctagctgctggttcttgcaataaagatgacagacacacgagtgtgtttgaactgcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggctagctgctggttcttgcaataaagatgacagacacacgagtgtgtttgaactgcaca 219
Query: 121 ggcctctgacttactcattgtggtggtctgattgagagtggtccctataggctagtatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggcctctgacttactcattgtggtggtctgattgagagtggtccctataggctagtatta 159
Query: 181 ttggaacacttagtcaccactgaatggttctgtttgaaaggattagaaggattaggaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttggaacacttagtcaccactgaatggttctgtttgaaaggattagaaggattaggaggt 99
Query: 241 gtggcctttttggatgaaatgtgccattgggggttggttttgaggctttaaaagcctgtg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 98 gtggcctttttggatgaaatgtgccattgggggttggttttgaggctttaaaagcccgtg 39
Query: 301 ccaagcccagtgtctccctctgtggatcaggacatagc 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ccaagcccagtgtctccctctgtggatcaggacatagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
