BAC Information

Click to search

BAC

Clone NameMSMg01-429L20
Chromosome9 (Build37)
Map Location 70,910,654 - 70,910,834
singlet/doubletsinglet
Overlap genenone
Upstream gene6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
Downstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429L20.T7 (MSMg01no429_l20.b1)MSMg01-429L20.TJ (MSMg01no429_l20.g1)
ACCAG522397AG522398
length812747
length of high quality
(start - end)
119 (64 - 182)195 (78 - 272)
definitionCHROMAT_FILE: MSMg01no429_l20.b1 PHD_FILE: MSMg01no429_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:19 2005CHROMAT_FILE: MSMg01no429_l20.g1 PHD_FILE: MSMg01no429_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTCATTCCGCCTTAATATGAAGGGATGTGCCTAGACTTACTGCAACTA
GATATGCTGTATTAGTTGATGTCCCTGGGATGCCTGCCCCAAAGGAGGAG
GAGTAGATCTGGGGGAAAAGGGGAGGTGGTGGTGAGAAACTGTTTTTATT
TTTATCTTTTTTATTTTTTTTTCTTTTTTTTTTCCTTCTGTTTTATCTTT
TTTTTCTTTTTTTTTTTCCCCTCTTTTTTTTTTCTTTTCTCCCTCTTTCT
ATTCTTTCTTTTTTTTTTTTTTCCTTTTTTTTTTTTCTTCTTCTTTCCTT
TTCTTTTTTTTTTCTCTTCCCCTTTTTTTTTTTTTTACTTTTTTTTGTCT
TTTTTTTTCTCTTATTCTATTTTCCTCTCTTTCTTACTTTTTTCTCTCCC
TCTTTTCTTTTTTTTTCTTTTTTATTTTTTTTTTTCTCTTTTTTCCTCTT
TTCTTTTTCTTTCCTTCATCTCCTCTCTTTTTTTCTTTCTTTTTTCTTTT
TTCCTCTTTTTCTTTTTTCTTTTCTTCTCTCCTTTTTTCCTCTTTTTCCT
CTTTTTTTTTTTTTTTTTTCCCTTTTATTTCTTTTCTCTTTTTTTTTTTT
CTTCTCTTCTTTTTTTTTTCTTTCCCCCCTTTCCCTTTTTTTTCTTCCTT
TTTTTTTTTTTTTTTTTCTCTTCTTCTGTTCTTTTTTTTTCTTTTCTCTC
TTTCCCTTTTCTTTTCTTTTTTATATTTTATTCCTTCCTTCCTTTTTTAT
TCTTTCTTTCCG
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTATTTGAAAACTTTATTG
ACCCAGGACTTACTTTTTGTCTAACTGCAGCTACTCAATTGAGGGAGGAA
CAAAGGGGACGAGTGATCCACCAGGAGTAAGCAAGAATCTTGACTTAGAG
ATCTAGGCCCCCTCCACAGCAACTTTGACCTCTCATCTAGGACCTTTCGT
GTCATCAATCAAATTTCTGAAGAACTATTTCACTTTAGACTTGGGCAAAT
ATAGAAATTTTTTTTAAAAATTGAAGATCTTGTATCCAAAAGTTGGAGAA
GGAAGGATCTATAAAACGTGGTGGGTCCTCCCTGCTTGGAAACAAGTTTA
CCCCGGGGAGGCCCTTCTGAACCTTCCAGGGGCCAGGTCTCCCAGGGGGG
GTCTAGGGAAAAAAAGGGGTTTTCCTGGGGGGCTTGGGGCTCCCTCCGGG
AGAACCCCCCCCCAATCTCTGGGGGGTTTTTTAACCAGGGGGCGGGGGGG
AGGGGATTTTAAATCCTCCCCGGGGGGGAAATTTGCCGGCCCCCCCCCAA
GGGGGGGTGTTTTTTTTTTTTTTGGGGGCCCCACCAATAATTTGGTTGGT
GCGCGGGGAATAATTTTATTTTCCTTCCCGTTTGTGGCCCCTCCCCCCCT
TGAGTGAGTTGTAGGGCGGTTTTTTTTTTTTTCACACGATTGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_l20.g1 MSMg01no429_l20.g1 CHROMAT_FILE:
MSMg01no429_l20.g1 PHD_FILE: MSMg01no429_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:19 2005
         (195 letters)



>mm_chr9_70910432_70911022
          Length = 591

 Score =  304 bits (157), Expect = 3e-87
 Identities = 179/193 (92%), Gaps = 12/193 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttatttgaaaactttattgacccaggacttactttttgtctaactgcagctactca 60
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cactttatttgaaa--------gacccaggacttactttttgtctaactgcagctactca 352

                                                                       
Query: 61  attgagggaggaacaaaggggacgagtgatccaccaggagtaagcaagaatcttgactta 120
           |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 att----gaggaacaaaggggacgagtgatccaccaggagtaagcaagaatcttgactta 296

                                                                       
Query: 121 gagatctaggccccctccacagcaactttgacctctcatctaggacctttcgtgtcatca 180
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 295 gagatccaggccccctccacagcaactttgacctctcatctaggatctttcgtgtcatca 236

                        
Query: 181 atcaaatttctga 193
           |||||||||||||
Sbjct: 235 atcaaatttctga 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 591
Length adjustment: 8
Effective length of query: 187
Effective length of database: 583
Effective search space:   109021
Effective search space used:   109021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)