BAC Information

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BAC

Clone NameMSMg01-430F01
Chromosome9 (Build37)
Map Location 96,102,194 - 96,102,446
singlet/doubletsinglet
Overlap geneTfdp2
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430F01.T7 (MSMg01no430_f01.b1)MSMg01-430F01.TJ (MSMg01no430_f01.g1)
ACCAG522838AG522839
length873835
length of high quality
(start - end)
---251 (80 - 330)
definitionCHROMAT_FILE: MSMg01no430_f01.b1 PHD_FILE: MSMg01no430_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:06 2005CHROMAT_FILE: MSMg01no430_f01.g1 PHD_FILE: MSMg01no430_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTATTATTTTAGTTTTTCTTTTTTTACTCTTTATTCTTAGAGGATCC
GCGGAATTCTGCACTGATTTTGAGGTTTCCAGCCATCATAATAAAGGTGA
ATCTGTGCACATGTGTGCTATTTGATGTCTTTGATAATTTCCCCTAGATG
ATCAGACTGTAGTATAATAGTGATCTGAATTCCAGCGTCTAAGTTTAGAT
TTCTCGTTTGTGCGGCCGCGTGTCCTTACTTTCCCCTATTAAGTTAAAGG
TTATGTAATTTCTGATGTCTCTCTATTTATTGTCCCTTATTCTCCTCCTT
TTTTTACTCCTACCTCTCTTATTCATTTTTTGATTATTGAACTCTTTGTC
CTCACGTCCCATTCACCTATCATCTTCTCTGTCCCTAATCTACCCCCTTT
ACTTCCACCCAGCCTTTATTCTTCCTTTACTTTTTTCTTTCTTATTCTCT
TCCCCTCTTTATTCATTCTTTATTTTCTTCTCTTTCTTTTCTCACAATTC
TTTTTACATTTGCCTTCTTTTATCTTCCTTTTTTCTAACTCTCTTACTTC
TCATCCTCCACCCTATCTTCTTTTTCCCTCCTTCTTCATTTATCCCTCCT
TCTTCCTTCTTTCTCTCTCTTTAACCCTCTCTATCCCCTCCTCTTAATCC
TATATCTAATCTTTACCCCCTTCTAACCTTTACCTCTTTCACCCCCCTTT
TCCTCTCTTCTTTTACCTTATTCTTCCCCCCTATCCCTATCCTTTCCTTT
TTACCCCCCTTTCATTTCTATTTAATTCTCTCTTATACCTCCTTTCTCTT
ATTTTCCTCTCTTCCTCTTTTTTTCTTTCATTCCTCTTTTTTATTTCCTC
TGCCTCTCCTCATATCCTCTCTG
CCACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCCCCAGATCCCACGTGAA
AGTAAAAGAAGAACTTATTTACATGGGTGCTGGAGCATGCGTGCACCCCC
AAGACAGCTTGTATAAATGGCAAAGCTATTGAAAGAAAAGAAAAATTAAG
TATATTTCAGAGGGACAATAAAAATACAATAGCAATCATAATGGCCATTT
CTGTTACTAGTGATAATACTTCATAAAAATGCTGTGGCTAATGTTGCTGT
TATCCACAGGGATATGGGTATGTGTGGTAACTTCCCCTGCTCCCTATCTA
CTTTTTTTTTCCTCTACTTCTCCTCCTTTCTTCCTCCTTCTTCCCCCCCT
TCGCTTCCTATTCTCTCCCTCTATTCACCCCTTTTTCTTCTCCCCCCATT
CTCTTTTCTCCCCTCTTCCTTTATTTCCCCCTCTTCCCTTTATCCCCGCT
ATCTCTCTCTCTTCTCTCTCCCTTTACTCTCTTATCTTTTTCCATCCACG
TTATCCTCCTCTCTCTCCTACCTCTTTTTTNTNCCAGAGTAGTAAAGAGN
TCCCTACCCCCCCCCTCTTTCCTCCTCTTTTCACGTCCCCCTATCCTTTT
TTCTCTTTTTCCTCTCTTCCCCATTATTCTCACCACCCCTATCTTTTTCT
ACCCTCTTCTTTTCCCCTTTTTTTTTCCCCTTTCTTCTTCTTCTGTCCTC
TTTCCATCCTTCCCCCCGCCTCCCTCCCTTCTCTCTTTTTTTTTTTCTTT
CCTTTCCTTCCCTCTTTACTCCCTCTTATAACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_f01.g1 MSMg01no430_f01.g1 CHROMAT_FILE:
MSMg01no430_f01.g1 PHD_FILE: MSMg01no430_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:06 2005
         (251 letters)



>mm_chr9_96101994_96102646
          Length = 653

 Score =  435 bits (225), Expect = e-126
 Identities = 246/253 (97%), Gaps = 2/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacccccagatcccacgtgaaagtaaaagaagaactta-tttacatgggtgctggagcat 59
           |||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct: 201 aacccccagatcccacgtgaaagtaaaagaagaacttactctacatgggtgctgcagcat 260

                                                                       
Query: 60  gcgtgca-cccccaagacagcttgtataaatggcaaagctattgaaagaaaagaaaaatt 118
           ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 261 gcgtgcaccccccaagacagcttgtataaacgtcaaagctattgaaagaaaagaaaaatt 320

                                                                       
Query: 119 aagtatatttcagagggacaataaaaatacaatagcaatcataatggccatttctgttac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtatatttcagagggacaataaaaatacaatagcaatcataatggccatttctgttac 380

                                                                       
Query: 179 tagtgataatacttcataaaaatgctgtggctaatgttgctgttatccacagggatatgg 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tagtgataatacttcataaaaatgctgtggctaatgttgctgttatccacagggatatcg 440

                        
Query: 239 gtatgtgtggtaa 251
           |||||||||||||
Sbjct: 441 gtatgtgtggtaa 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 653
Length adjustment: 9
Effective length of query: 242
Effective length of database: 644
Effective search space:   155848
Effective search space used:   155848
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)