Query= MSMg01no430_i23.b1 MSMg01no430_i23.b1 CHROMAT_FILE:
MSMg01no430_i23.b1 PHD_FILE: MSMg01no430_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:28 2005
(384 letters)
>mm_chr9_117072327_117073106
Length = 780
Score = 623 bits (322), Expect = 0.0
Identities = 365/384 (95%), Gaps = 13/384 (3%)
Strand = Plus / Minus
Query: 1 tctgctttacaatgagagtctaggaggggctattaaaaccaaaactatgaaaagagtaaa 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 663 tctgctttacaatgagagtctaggagcggctagtaaaaccaaaactatgaaaagagtaaa 604
Query: 61 caaacaaacaacaacaacaacaacaaaaacaaacaaatgaaacgacctttatgcccactt 120
||||||| || |||||| ||| |||||||||| || |||||||||||||||||||
Sbjct: 603 caaacaa--aa-aacaactaca--aaaaacaaac----gacacgacctttatgcccactt 553
Query: 121 ccccttctccttgctgagatttttgtctgggtcgaacttgtgcagtctgggaacagggtc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ccccttctccatgctgagatttttgtctgggtcgaacttgtgcagtctgggaacagggtc 493
Query: 181 ccagaatggtgatcatgggtgcttttagtggcagccattgctgtctcattctctaattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccagaatggtgatcatgggtgcttttagtggcagccattgctgtctcattctctaattcc 433
Query: 241 aacccaggatttgtagataactgtgctcagaaaataagaagttctctctgacacgttaat 300
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 432 aacccaggatttgcagataactgtgctcagaaaataag---ttctctctgacacgttaat 376
Query: 301 gcccggcccctcccctatgctccaacctaattaatggggatgattcggtgcaggcagcat 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 375 gcccggcccctcccctatgctccaacctaattaatgggga-gattcggtgcaggcagcat 317
Query: 361 caggcttgtggaagtcatcatccc 384
||||||||||||||||||||||||
Sbjct: 316 caggcttgtggaagtcatcatccc 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 780
Length adjustment: 9
Effective length of query: 375
Effective length of database: 771
Effective search space: 289125
Effective search space used: 289125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_i23.g1 MSMg01no430_i23.g1 CHROMAT_FILE:
MSMg01no430_i23.g1 PHD_FILE: MSMg01no430_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:28 2005
(389 letters)
>mm_chr9_116916565_116917354
Length = 790
Score = 723 bits (374), Expect = 0.0
Identities = 386/390 (98%), Gaps = 1/390 (0%)
Strand = Plus / Plus
Query: 1 agttaggagagcaatgaacaatcccagctcattttcagtatacttgagggtctgcagaga 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaggagagcaatgaacaatctcagctcattttcagtatacttgagggtctgcagaga 260
Query: 61 tagctcagctgctaagagcacattgttagaggacccaagttccattctcaggaccacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctcagctgctaagagcacattgttagaggacccaagttccattctcaggaccacaac 320
Query: 121 aagtgactcacaaccacctggcgctccaactacagaggatccacacaatgccctcttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgactcacaaccacctggcgctccaactacagaggatccacacaatgccctcttctg 380
Query: 181 gcctccttcggcatctgtacatatatgcacttataagtacacacacaagtgtgtataaaa 240
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gcctccttcggcatctatacatatatgcacttataagtacacacacaagtgcgtataaaa 440
Query: 241 ataaaataaatattttaaaatgtatacttagtcatgttctaaaaccttgactagaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaataaatattttaaaatgtatacttagtcatgttctaaaaccttgactagaaaaga 500
Query: 301 ttttttt-ctcatttctctcagctaaacatcatcatgaacctagagttgaattgaacttc 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttttctcatttctctcagctaaacatcatcatgaacctagagttgaattgaacttc 560
Query: 360 aacaaatctacagaaaccaatttggccagt 389
||||||||||||||||||||||||||||||
Sbjct: 561 aacaaatctacagaaaccaatttggccagt 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 790
Length adjustment: 9
Effective length of query: 380
Effective length of database: 781
Effective search space: 296780
Effective search space used: 296780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
