Query= MSMg01no431_a05.b1 MSMg01no431_a05.b1 CHROMAT_FILE:
MSMg01no431_a05.b1 PHD_FILE: MSMg01no431_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:09 2005
(597 letters)
>mm_chr9_92138591_92139587
Length = 997
Score = 959 bits (496), Expect = 0.0
Identities = 577/616 (93%), Gaps = 28/616 (4%)
Strand = Plus / Plus
Query: 5 gaattcacacttatattcc-ctattttggaaaatggtagatttttttttcttcttttcag 63
||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 206 gaattcacacttata-tccactgttttggaaaatggcagatttttttttcttcttttcag 264
Query: 64 gttgataaaactcaa-ttttaaaaaaaaaaaaaaaagaagaagaagaagactaacgttgt 122
||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 265 gttgataaaactcaatttttataaaaaaaaaaaaaa-aa-aagaagaagactaacgttgt 322
Query: 123 cctcactttgacatcctacaagattgcagattaggtcaatctagctcttttccaaatctc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 cctcactttgacatcctacaagattgcagattaggtcaatctagctcttttccgaatctc 382
Query: 183 ctctgtgatgttttctgaattagagcatggtccattgttcaaggtaggaacatcctgtga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctctgtgatgttttctgaattagagcatggtccattgttcaaggtaggaacatcctgtga 442
Query: 243 tgttagaacctagtggggaaatccccacccaattccccatccaaaaaaatcacgaaggac 302
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 443 tgttagaacctagtagggaaatccccacccaattccccacccaaaaaaatcacaaaggac 502
Query: 303 catctcttgatgtaattacatgaggacgtttaattacggagctccggaccgacatgcatc 362
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 catctcttgatgtaattacatgaggacgtttaatgacggagctccggaccgacatgcatc 562
Query: 363 ccacacaggagataa-gagatgtcggccacgaggctcgaaagccaggggattttatgggg 421
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccacacaggagataacg-gatgtcggccacgaggctcgaaagccaggggattttatgggg 621
Query: 422 taaggagcttaggggtgtggaattcagc-------------------ttatttaaacatt 462
|||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 622 taaggagcttaggggtgtagaattcagcataacgacacactattggcttatttaaacatt 681
Query: 463 aacagaaagattacatgttagcaaaagggcatcagggctttgttcctgtgggctgggggc 522
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682 aacagaaagattacatgttagcaaaagggcatcaggactttgttcctgtgggctgggggc 741
Query: 523 ttatctttgttcacatagcaaccagttgatgtacgactttacc-aggtgtcaaggggcag 581
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct: 742 ttatctttgttcacatagcaaccagttgatgtacgactttacccag-tgtcaaggggtag 800
Query: 582 tagacagaggggaggt 597
||||||||||||||||
Sbjct: 801 tagacagaggggaggt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_a05.g1 MSMg01no431_a05.g1 CHROMAT_FILE:
MSMg01no431_a05.g1 PHD_FILE: MSMg01no431_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:09 2005
(511 letters)
>mm_chr9_92256088_92256998
Length = 911
Score = 963 bits (498), Expect = 0.0
Identities = 504/506 (99%)
Strand = Plus / Minus
Query: 6 tggatatatgttgcttggctaggatagagacctgggaatgcttcatttacatacagaaga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tggatatatgttgcttggctaggatagagacctgggaatgcttcatttacatacagaaga 852
Query: 66 attccaagaatcagattggcagcttagattgggagagaggaagttgaacctgtaatgtgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 attccaagaatcagattggcagcttagattgggagagaggaagttgaacctgtaatgtgg 792
Query: 126 ccacagacttcatgactctcctccgaggttagggatgtagaggtcataattcagagcaaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccacagacttcatgactctcctccgaggttagggatgtagaggtcataattcagagcaaa 732
Query: 186 caggctgagagcagggagagagcagccacaactccattctctcaggatgagattttcatc 245
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 caggctgagatcagggagagagcagccacaactccattctctcaggatgagattttcatc 672
Query: 246 acaatccaactcttgctccaggccagcaccccattagcaagtccccccgccccccgtaaa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 671 acaatccaactcttgctccaggccagcaccccattagcaagtccccccgccccctgtaaa 612
Query: 306 tatgtgtgtatgtgtaaaatcatttctttatgtgtgtgcttttccagggggagtaggttt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tatgtgtgtatgtgtaaaatcatttctttatgtgtgtgcttttccagggggagtaggttt 552
Query: 366 gaaataagccatggaagcagatagtcaagatttcctgcccaaaacgatcatttatcatgc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaaataagccatggaagcagatagtcaagatttcctgcccaaaacgatcatttatcatgc 492
Query: 426 atagataacatatggcttaatttaaagctctgggaaactaaaacatccagtatttgttaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atagataacatatggcttaatttaaagctctgggaaactaaaacatccagtatttgttaa 432
Query: 486 gtaaattattttttaaggcatttcag 511
||||||||||||||||||||||||||
Sbjct: 431 gtaaattattttttaaggcatttcag 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
