XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCATTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATTGTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCTTTTCTGGGGCTTCAATTCTATTCCCATGGGCTACTTGCC
TGGCTCTAAAACAGAACAATGCAGGTTTTTACCCAATTGGTTCGCATAAA
AGCTTTAAGCCTCGCTTTGGGATTCCCCCAAGGTCCTTTTTCCCTTGAAA
AAAATTTTGTTATCCCAGTCTCTGTGCATTCCACAGAAATTGGACTTGTT
CCTCCGCAATCCTTTAAAG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGGGTAAGTGAAGCCTCATTTAACCTTGCAGCATC
CCCATCCTGCCCCAGTGGGCTCACTGTTTAGAGACAAAGCAGCTGGCTTC
AAACATCAAACAGACTTGGAGGAAACCAGACAGCCACATGGACTAGAGGA
CACTGCAGCCAGTCCTTGAAGGATGTGTGGCCAGAATAAACATGGAGAAG
TCAAAGAACCTGTATCTACAACTGCCTTCAATGCAAAATCACTTCTCCAT
GTCAGGGAGCCTGTGTGAGAAGGGGGGAGGTTCAGAAGGCACACCACCAC
AAGCCCCAGGGGACCCGGAGTGTTACCATACTGCAAAGCTTGGCTTTGAC
CCCGGCTCTCACTAGCTCAGAGCCTTTATTCCTGTATGGAAAAGCAAGGC
TAACTCTGGACCTAAAAGGACGAAGTGGGACTACTGTTTAAATATGACTG
GCACACCANGNATCTCACACCCCCACAGAGGGTTAGAAGCAGCAGTTCAG
CATAAAAGCCTGGTATATTATCAAGAGCATGTTTTGAATCTGCCAGTGGC
TGTAGTCTTGTAACCCGTGTGTTCCCTTCTTGTTGGAAATTGCCTTTCTC
GAATACCTCCCTTCTCCATTGTGTTGGGCTATCCCGTGTCCACACCTCCC
CTGGAGTCTTTAATTCATTATCCATTCGCGTCTTCTCCTCCTTTTTCTTC
CAGCTCGTCTG

Query= MSMg01no431_a14.g1 MSMg01no431_a14.g1 CHROMAT_FILE:
MSMg01no431_a14.g1 PHD_FILE: MSMg01no431_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:11 2005
         (461 letters)



>mm_chr9_67403240_67404100
          Length = 861

 Score =  857 bits (443), Expect = 0.0
 Identities = 459/471 (97%), Gaps = 10/471 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggtaagtgaagcctcatttaaccttgcagcatccccatcctgccccagtgggctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aggggtaagtgaagcctcatttaaccttgcagcatccccatcctgccccagtgggctcac 250

                                                                       
Query: 61  tgtttagagacaaagcagctggcttc----------aaacatcaaacagacttggaggaa 110
           ||||||||||||||||||||||||||          ||||||||||||||||||||||||
Sbjct: 251 tgtttagagacaaagcagctggcttcaggtggcatgaaacatcaaacagacttggaggaa 310

                                                                       
Query: 111 accagacagccacatggactagaggacactgcagccagtccttgaaggatgtgtggccag 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 accagacagccacatggactagaggacactgcagccagtccttgaaggatgtgtggccag 370

                                                                       
Query: 171 aataaacatggagaagtcaaagaacctgtatctacaactgccttcaatgcaaaatcactt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aataaacatggagaagtcaaagaacctgtatctacaactgccttcaatgcaaaatcactt 430

                                                                       
Query: 231 ctccatgtcagggagcctgtgtgagaaggggggaggttcagaaggcacaccaccacaagc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctccatgtcagggagcctgtgtgagaaggggggaggttcagaaggcacaccaccacaagc 490

                                                                       
Query: 291 cccaggggacccggagtgttaccatactgcaaagcttggctttgaccccggctctcacta 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cccaggggacccggagtgttaccatactgcaaagcttggctttgaccccggctctcacta 550

                                                                       
Query: 351 gctcagagcctttattcctgtatggaaaagcaaggctaactctggacctaaaaggacgaa 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gctcagagcctttattcctgtatggaaaagcaaggctaactctggacctaaaaggacgaa 610

                                                              
Query: 411 gtgggactactgtttaaatatgactggcacaccangnatctcacaccccca 461
           |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 611 gtgggactactgtttaaatatgactggcacaccaggcatctcacaccccca 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)