Query= MSMg01no431_c04.b1 MSMg01no431_c04.b1 CHROMAT_FILE:
MSMg01no431_c04.b1 PHD_FILE: MSMg01no431_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:19 2005
(249 letters)
>mm_chr9_96341469_96342117
Length = 649
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%)
Strand = Plus / Plus
Query: 1 atgagaccccgtctcaaaatgagagaacacacactaggaaaaatagttctaagtccaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagaccccgtctcaaaatgagagaacacacactaggaaaaatagttctaagtccaagc 260
Query: 61 ttgggggttgcctggcttcccatctcattgcttagaagccttcattgctatctcagaacc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggggttgcttggcttcccatctcattgcttagaagccttcattgctatctcagaacc 320
Query: 121 cattgggcaaacgctactgccccatgttcagcccttcatacctggtactccatgctctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattgggcaaacgctactgccccatgttcagcccttcatacctggtactccatgctctgg 380
Query: 181 gcaggtgcagagctcttcgtcctgtgtcggggctacaggcctcacagctcagggtacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggtgcagagctcttcgtcctgtgtcggggctacaggcctcacagctcagggtacttc 440
Query: 241 agctg 245
|||||
Sbjct: 441 agctg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no431_c04.g1 MSMg01no431_c04.g1 CHROMAT_FILE:
MSMg01no431_c04.g1 PHD_FILE: MSMg01no431_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:19 2005
(339 letters)
>mm_chr9_96498873_96499610
Length = 738
Score = 594 bits (307), Expect = e-174
Identities = 331/339 (97%), Gaps = 1/339 (0%)
Strand = Plus / Minus
Query: 1 aacagattagaattgctcagggagcatcaaaatataagaacagaatcctactcaaattag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 538 aacagattagaattgctcagggagcatcaaaatataagaacagaagcctacccaaattag 479
Query: 61 tgggcaaaggggaatgcattagaaagtgtgtagggagctgtttgaagccaaattacagga 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 478 tgggcaaaggggaatgcattagaaagtgtgtagggagctgtttgaagtcaaattacagga 419
Query: 121 acttcctcgggaatatgagctacatagttcccagacatttgcacacatacttcgtggtaa 180
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 418 acttcctcgggaatgtgagctacatagttcccagacatttgcacagatacttcgtggtaa 359
Query: 181 tggcagttaggttctgacagtagcacacaagatagaaattcacataagttaaaaatgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tggcagttaggttctgacagtagcacacaagatagaaattcacataagttaaaaatgatc 299
Query: 241 cttgaagtgacttaagtcctcataacatggttgactgccacagagaacattagtttttat 300
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cttgaagtgac-taagtcttcataacatggttgactgccacagagaacattagtttttat 240
Query: 301 ctggggctttgatgaacaaacgctgtctagtgtcattct 339
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 239 ctggggctttgatgaacaaacgctgtgtagtgtcattct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 738
Length adjustment: 9
Effective length of query: 330
Effective length of database: 729
Effective search space: 240570
Effective search space used: 240570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
