BAC Information

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BAC

Clone NameMSMg01-431F21
Chromosome9 (Build37)
Map Location 84,841,942 - 84,842,395
singlet/doubletsinglet
Overlap genenone
Upstream geneBckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F21.T7 (MSMg01no431_f21.b1)MSMg01-431F21.TJ (MSMg01no431_f21.g1)
ACCAG523642AG523643
length8031,228
length of high quality
(start - end)		458 (33 - 490)---
definitionCHROMAT_FILE: MSMg01no431_f21.b1 PHD_FILE: MSMg01no431_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:39 2005CHROMAT_FILE: MSMg01no431_f21.g1 PHD_FILE: MSMg01no431_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAGAAG
CTTCATCAAATATCACACTTTCTGACTTCTTGGAGTCCTATCAACAGGTG
TGCCCACCAGCAGTCATTTCCTTCAATCTGGCTAGGATCATCTTGTTGCT
AATTAACTGGGTAGGCTTCAACTCAACTCTGCAATTAGAGGCCATCAAGT
GGGAGCCTTTGACTGGGTAGTAAGACATGATCCATACCATCCACCCTTCA
GTGACTGGTTGTCAGGATCCCAGTTAATTCAATAACTACCTGATCAGCAG
GAATTCAGTCTATTGCCCTGACTCAGATGATCAGGTGACAACATGAATGG
TTTATATAAAGCAAAGTAGAATATTAATGGCTGGGGTATACACATGAATG
AGGGGTGCTGACATCTTTCAGGTTGATATGTCATGATTATGTCATGATTC
TCTTCTTGTGTGAATCAGAGGTTCATTCAGGGATATTTAGTGTGCACAAT
TTTAGTAAACTTCATAGACTGGAATATCCAGTTTAGTANNGAAAATACTA
AAATTATAGCATGATTTAAGCAAGAGTAATGGAAGTTCATGATGTTATAT
AAACCCAACTGGCTTGAAGGGTTCATTCATTATCTATTTTACCGTAGGGG
TGGAAGGAATTCCAAGGAAAAATTCCCTCTCCCTGCCCCCCCTTTAAAAA
TTTCAGGGTCCTGGAGGCAAAAACATTAAAAAAAAAATTTTCTGCGCCCA
CTCTGATTAATTTTTCGCAAAAAGGACCCCCATTTCAATAAAATTTTTCC
CAA

CAAAGGAAACAGACATACGGCGAAGAGTTATTATTAACTAAATACGTGCG
GGCAGCGAGACAAGCAAGAATTGAGCGATAAATACAGAGCACAACACGAA
ACGAGGGAAGTAGGCCACTCGTATTAGAAGAAGCGAGCATGATGAATACA
CGTTGTGGACGATAGAGCTTGTCGCCAGGAATTACTAGATACCAGCGCCA
ACTCGACTACAATATAACTTTATCAGCAGATAGAAAATCTCGCCTCACAT
CAGATACGAAAAAGCGGGAAAGAGTGAACGCGCAAGACGGCATCGCGAGA
CAGTAGGAGATCGGCTCTACCCGCTCGAATATTCCAGTACTTCGACGACA
CCACCCGGGCAAGCCAACTTACGGGAGCACTATCTATAGCGTTAGATACG
GAATTAAATCTCAGGCCTGCGGATGCAGTCACTCGGGAATCATAGGTGCG
TGGAGTGCACGTTTGCAATTCCGCCCTAATAAGACATCATCTATTTCTGG
ATAAACCTATTACGCTCACCGCACTTGTTCTGTAGTACGCCCGCATCTTC
TTACTCACTATCTATCTCACTACCATGTCGATGACCGTATCCCGCGCGTG
CTTCTTTGGACTAGCTCGCTCATTCTTTTAGCCCGGACGCAACTAACACA
CAGCGCGATACCGTGTGACCTCGACAGATCATATGATAATGTGTAAGCGC
TACTGCCGGTCGCATGCGTGATTATCGTCGACCGCGGCACGTCGCTCGCC
TTAGTGTTATACGTCCGGGTTGAGCCCCGCTCCNCTTAACCTCATGCGCT
CGTTGATATTACGCGGTTCTGCGTATGCCCCCCCCGACGTATCCTNATTC
TATAACNTAATTCACTAGACCGCAACTCATGGCACTTCTCCCGCTTATCA
TTATCCCGACACGACGATTGCGTCTCCCCATTCCGCCCCCTACTACGACC
CATCTATACAGCAGCGCCCTCTAACGCCACGTTTCATAAATCGTCGCTCA
TATATAAGCATACACCAACCACGTTCATTCCGCGCCTGTATAGTAGGAAT
ACNACAATGCTACAATATGGGTGTATGACGTTCGCCTNATTGGTAATCGG
CATTGTAATACGACAGCGCACAGACACCGCCGCACTTGAGACATTTTGCC
CATTTACACACACCCCGCGTAGTCGTGTGTAATGAGAACCAAACCCACAT
CTGTACTGCGTTACCTATGTGGTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f21.b1 MSMg01no431_f21.b1 CHROMAT_FILE:
MSMg01no431_f21.b1 PHD_FILE: MSMg01no431_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:39 2005
         (458 letters)



>mm_chr9_84841738_84842595
          Length = 858

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagaagcttcatcaaatatcacactttctgacttcttggagtcctatcaaca 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagaagcaccatcaaatatcacactttctgacttcttggagtcctatcaaca 264

                                                                       
Query: 65  ggtgtgcccaccagcagtcatttccttcaatctggctaggatcatcttgttgctaattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgtgcccaccagcagtcatttccttcaatctggctaggatcatcttgttgctaattaa 324

                                                                       
Query: 125 ctgggtaggcttcaactcaactctgcaattagaggccatcaagtgggagcctttgactgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgggtaggcttcaactcaactctgcaattagaggccatcaagtgggagcctttgactgg 384

                                                                       
Query: 185 gtagtaagacatgatccataccatccacccttcagtgactggttgtcaggatcccagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtagtaagacatgatccataccatccacccttcagtgactggttgtcaggatcccagtta 444

                                                                       
Query: 245 attcaataactacctgatcagcaggaattcagtctattgccctgactcagatgatcaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcaataactacctgatcagcaggaattcagtctattgccctgactcagatgatcaggt 504

                                                                       
Query: 305 gacaacatgaatggtttatataaagcaaagtagaatattaatggctggggtatacacatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaacatgaatggtttatataaagcaaagtagaatattaatggctggggtatacacatg 564

                                                                       
Query: 365 aatgaggggtgctgacatctttcaggttgatatgtcatgattatgtcatgattctcttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgaggggtgctgacatctttcaggttgatatgtcatgattatgtcatgattctcttct 624

                                             
Query: 425 tgtgtgaatcagaggttcattcagggatatttag 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgtgaatcagaggttcattcagggatatttag 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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