Query= MSMg01no431_k05.b1 MSMg01no431_k05.b1 CHROMAT_FILE:
MSMg01no431_k05.b1 PHD_FILE: MSMg01no431_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:02 2005
(473 letters)
>mm_chr9_15594577_15595447
Length = 871
Score = 861 bits (445), Expect = 0.0
Identities = 463/473 (97%), Gaps = 8/473 (1%)
Strand = Plus / Plus
Query: 1 aagaggtctctgtcttcttgccatccaaaagcccaggcagagagatgccattttcacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaggtctctgtcttcttgccatccaaaagcccaggcagagagatgccattttcacatg 260
Query: 61 taattttcagggtcattccacacaggatatcaaagcagtgaacaaagcagagagtacaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 taattttcagggtcattccacacaggatatcaaagcagtgaacaaagcagag--tacaga 318
Query: 121 tttggcctggagccactttaccaactgctattaaaaaatgtcacgtacatgaagtcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttggcctggagccactttaccaactgctattaaaaaatgtcacgtacatgaagtcagtt 378
Query: 181 agctggcctgtctggattactctgtatctcctttttgaagacctttggttcaatatactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 agctggcctgtctggattactctgtatctcctttttgaagacctttggttcaatacactc 438
Query: 241 agccttcatcttcatttgaatctcctagaggtactatttactttaagcagacaccagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agccttcatcttcatttgaatctcctagaggtactatttactttaagcagacaccagaga 498
Query: 301 aagaattcactagattctggtgtattttcattaatgaacaaaaccattaagtatatatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagaattcactagattctggtgtattttcattaatgaacaaaaccattaagtatatatat 558
Query: 361 atatatatatatatagtagcctggtcattaatattcagtctgaagagtaagagagttata 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atatatata------gtagcctggtcattaatattcagtctgaagagtaagagagttata 612
Query: 421 ggttcattaactacagacttagtaagtacattttagggtgaggaaaaccaatt 473
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggtttattaactacagacttagtaagtacattttagggtgaggaaaaccaatt 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_k05.g1 MSMg01no431_k05.g1 CHROMAT_FILE:
MSMg01no431_k05.g1 PHD_FILE: MSMg01no431_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:02 2005
(471 letters)
>mm_chr9_15787691_15788561
Length = 871
Score = 864 bits (447), Expect = 0.0
Identities = 465/471 (98%)
Strand = Plus / Minus
Query: 1 ccttgcaatttggaatgtgagggatctcagaagtgtagaggctctgaacactcatcagaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccttgcaatttggaatgtgagggatctcagaagtgtagaggctctgaacactcatcagac 612
Query: 61 tcatcagacactttctcgtcaacttagctaatacttcatgagcaacagggcaacgaatca 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 611 tcatcagacactttctcgtcaacttagctaatacttcataagcaacagggcaacaaatca 552
Query: 121 ctgtaaagggacagcaagactttccgagataagttatgtagagtgatagtcctcaagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctgtaaagggacagcaagactttccgagataagttatgtagagtgatagtcctcaagcta 492
Query: 181 ctcagaggtcacggagtaaatcacaaaggtagagccttagaatgggtgagacttgacttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctcagaggtcacggagtaaatcacaaaggtagagccttagaatgggtgagacttgacttg 432
Query: 241 gggagagtctttatgaagaacagtcttagaatgacatatacatcaggaagatgaagccct 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gggagagtcttcaggaagaacagtcttagaatgacatatacatcaggaagatgaagccct 372
Query: 301 aaagatgggactctataaaccaaactaagagctgggagaacatcatattgtccaagatag 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 aaagatgggactctataaaccaaactaagagctgggagaacagcatattgtccaagatag 312
Query: 361 gggagaggagataagaccagaaaactgggcagggtgtgtctgtaatcattcaggaagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggagaggagataagaccagaaaactgggcagggtgtgtctgtaatcattcaggaagcct 252
Query: 421 agggatcaagtattcaaccagagaaagaaaatgggtgactgtctttaagaa 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agggatcaagtattcaaccagagaaagaaaatgggtgactgtctttaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
