BAC Information

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BAC

Clone NameMSMg01-431N05
Chromosome9 (Build37)
Map Location 39,264,923 - 39,265,376
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1
Downstream geneOlfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N05.T7 (MSMg01no431_n05.b1)MSMg01-431N05.TJ (MSMg01no431_n05.g1)
ACCAG523994AG523995
length1,269762
length of high quality
(start - end)		---454 (70 - 523)
definitionCHROMAT_FILE: MSMg01no431_n05.b1 PHD_FILE: MSMg01no431_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:18 2005CHROMAT_FILE: MSMg01no431_n05.g1 PHD_FILE: MSMg01no431_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GAACCCCTCTAGTGCCTGTTAAATAACNAACATCTCTATTTAACAACAAG
AAAACGGCGAAAGATCCTTCTCTCTTTCTCACCCGCCCTTACGCCGCTTC
GTTCACATACAACGCGTACCCCGTATAACCCCCACGTACCGCCTATGTAC
ATCATCACATTCGATTTTAATCATCTCGTATCAGATAAACTACCACAGCT
GTGATGTAACACAGTATATGACATCACCGGATCTAGACTACCTACGGAAC
GATCTTGTTATTATTTACTTCCACACCATCGACCACTCATCCGGGTAGAC
CCTGAGGATCGAGATGGCAGCACGTGCTTATCGAATTGCACCAAGATGAC
CGCGTTGAGGTTCGCGGACTGGTTGCGCCGGGACTGCACGGACTAATAAA
CGTAGACATTGTGTAGTTGGTTGCGTCCGTCGCTATCCTCCATGTGTGCT
GTGTTCTCCCGTTATCAATTTCGTCACCCTATGCGGCGAACCCCACCTAT
CACGCACGCGCACTACCGCATTTATTGATTAGAAGCGTAGACGTATAGTA
TATAGCGAGAATAATAGTAGTGTCCGACCTGCGTTAGTACGCACAACGCG
CTAGAGGCGCCGTCTAGAATCTGTGTCTTCATACCGCCTTATATTAACCC
GCCAGTACTCGTGGGTCATATCTCTTTATCATTTCCGCCCCTATCGATAT
GTACTCAGATTGTCGCGTGATACGTAGTTGTGGGATGGAGCACAGTATAC
ATCCATGTACATATCGTATGTNCGCCGGCGCGACGAGAAGATATAGACGT
TAACAATATTACACATGTATCAACAANCACCGCTCGTGTNATCATTGTGA
CTATATTCATCGATATCAGACACGCGCTCATTCACTACTATTATATGCCC
GTGTTAGACGTTCGCCACCTCGCCTTGAGAACTCATCTGACTATTTGTCT
TTACGACGTATGCGACACGCGCGCACCGCCGAGTTTACTTTTATATCTGT
TACATATGCGCGCCCTACGACGAATCGCGGCGAAGCGACGAAGCTACGCG
CTACACCGCAGCCGCGATAACATAACAATAATTACTGCCGTACCGAGCGT
GTACTAACGGCGTTGTACGTGTATACGTAATCGACTCTTCTCAATACTAT
CACCGCTAGTGATGTCGTTTCGCTCTACGCGGTCACCATCCCGTAATACG
TGTGCGTGCTGCGACGCGGGCGATGAAAAGACTGACCGAATCCTATACGG
TATCTCCGCGGGCGACACN

CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTACATATTAAAATAGAAGTTTAATACCAA
ATAGCTACTATGATTTATTAAATAAAAAAGTGGAAATAAATTAAGCATGG
ACAAATAAATGTATTAACCTGCAAATTGCTTTTGAAATTAACATGTTATA
AGAGATAAATTAACATGTTATAAGAGATTTTGATATTTGAAAGCATAAAT
GTTATACTTTAATAATCATACAGGAATGTTATGAAAGTTGCTTGTTTGAA
AAAGGGGAAAATTTCAAGCTCTTGTTCTATACTGCATCCTAAGTCTGTTG
ATAATTTGTTTTCAAAGATCTAGAGAAACGATTCTTTTCCAGTTTATATG
TAAACCAAAAACTGTTCACTCTCTTTTCCTCCTTGACTCTTCATTCATAC
AACTCTCTAGCTCTGTGATGGACACATTTGGTTACTTACAGTTCCTAAAT
TACATTGATTAACTGTCCATATTTTAGAATGCTGTTTATTCTACTTGAAA
GAGTGTCACTAAACAGTATTCCTCTATTAATTGGCAAGCATGTATATCCC
TTTATACCCTATCTAAAACTGTTACTGACAGGTTGGGATTCTCCCAAATC
TTTTAATAAAATCATTCCCTTCTTACAAGGTCTCTAATAAGGGGCTAATT
TTTCAAACTTCGCCCTCCCTTTGTGTAATTTACATACTCCTCTATACCTA
AACTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n05.g1 MSMg01no431_n05.g1 CHROMAT_FILE:
MSMg01no431_n05.g1 PHD_FILE: MSMg01no431_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:18 2005
         (454 letters)



>mm_chr9_39264723_39265576
          Length = 854

 Score =  801 bits (414), Expect = 0.0
 Identities = 444/454 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacatattaaaatagaagtttaataccaaatagctactatgatttattaaataaaaaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 attacatagtaaaatagaagtttaataccaaatagctactatgatttattaaataaaaaa 595

                                                                       
Query: 61  gtggaaataaattaagcatggacaaataaatgtattaacctgcaaattgcttttgaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtggaaataaattaagcatggacaaataaatgtattaacctgcaaattgcttttgaaatt 535

                                                                       
Query: 121 aacatgttataagagataaattaacatgttataagagattttgatatttgaaagcataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 534 aacatgttataagagataaattaacatgttataagagattttgatatttgaaaacataaa 475

                                                                       
Query: 181 tgttatactttaataatcatacaggaatgttatgaaagttgcttgtttgaaaaaggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 tgttatactttaataatcatacaggaatgttatgaaagttgcttgtttgaaaatggggaa 415

                                                                       
Query: 241 aatttcaagctcttgttctatactgcatcctaagtctgttgataatttgttttcaaagat 300
           || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 414 aaattcaagctcttggtctatactgcatcctaagtctgttgataatttgtttttaaagat 355

                                                                       
Query: 301 ctagagaaacgattcttttccagtttatatgtaaaccaaaaactgttcactctcttttcc 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctagagaaatgattcttttccagtttatatgtaaaccaaaaactgttcactctcttttcc 295

                                                                       
Query: 361 tccttgactcttcattcatacaactctctagctctgtgatggacacatttggttacttac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tccttgactcttcactcatacaactctctagctctgtgatggacacatttggttacttac 235

                                             
Query: 421 agttcctaaattacattgattaactgtccatatt 454
           ||||||||||||| |||||||||| |||||||||
Sbjct: 234 agttcctaaattatattgattaaccgtccatatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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