Query= MSMg01no432_g08.b1 MSMg01no432_g08.b1 CHROMAT_FILE:
MSMg01no432_g08.b1 PHD_FILE: MSMg01no432_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:06 2005
(492 letters)
>mm_chr9_51242605_51243495
Length = 891
Score = 884 bits (457), Expect = 0.0
Identities = 478/485 (98%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 8 ttcctgtggtagcaggtatagggcaactgactcttgacccggttaataagcaatatatct 67
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttcctgtgggagtaggtatagggcaactgactcttgacccggttaataagcaatatatct 632
Query: 68 gagctaccaatgagaagctatgcttctggcctcttagcctcctcagaagaaaatcagatg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gagctaccaatgagaagctatgcttctggcctcttagcctcctcagaagaaaatcagatg 572
Query: 128 cagcaatatttagaaaacaaaagacaaaaaacaaaaacaaaatcacagcatacaagcata 187
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 571 cagcaatatttagaaaacaaaagac-aaaaacaaaaacaaaatcacagcatacaagcaaa 513
Query: 188 gaaaatatctatcagagcacagtataaacatctatgcacatatataaatatacagaaaat 247
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 512 gaaaatacctatcagagcacattataaacatctatgcacatatataaatatacaggaaat 453
Query: 248 caggttgacttcaaaccagctattttcatgaataaaactaacagcttcctttgttgttcc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caggttgacttcaaaccagctattttcatgaataaaactaacagcttcctttgttgttcc 393
Query: 308 tgtaagatcaaggaaaacggaatgtgtagttatttttaaaatccacccagggttcccctg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgtaagatcaaggaaaacggaatgtgtagttatttttaaaatccacccagggttcccctg 333
Query: 368 agcaaatggtccctcactaaattagcaaatgaataacggcaatgcgatgactctgggaat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agcaaatggtccctcactaaattagcaaatgaataacggcaatgcgatgactctgggaat 273
Query: 428 cacacatgtcagaaaatcacagtgctcaggaacaaaagaaaacaagcagctgagtctttc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cacacatgtcagaaaatcacagtgctcaggaacaaaagaaaacaagcagctgagtctttc 213
Query: 488 agggg 492
|||||
Sbjct: 212 agggg 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_g08.g1 MSMg01no432_g08.g1 CHROMAT_FILE:
MSMg01no432_g08.g1 PHD_FILE: MSMg01no432_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:06 2005
(252 letters)
>mm_chr9_51204172_51204823
Length = 652
Score = 484 bits (250), Expect = e-141
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 3 agtgggctcttctttttcaactgctggtgctagtctgggtgaacctctttgtctgctcag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agtgggctcttctttttcaactgctggtgctagtctgggtgaacctctttgtctgctcag 262
Query: 63 taatctcatgattaagtatgtaactgtgaatagaaatagatgcatggaaaccctgatgct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatctcatgattaagtatgtaactgtgaatagaaatagatgcatggaaaccctgatgct 322
Query: 123 cacaaaacttccctgctaaggtaatttacattaattgggtgttgtttgggatccagaatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cacaaaacttccctgctaaggtaatttacattaattgggtgttgtttgggatccagaatg 382
Query: 183 tattctctgtctttggttcttaaacttgtagtcatagttttaaatgcagattctggtatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tattctctgtctttggttcttaaacttgtagtcatagttttaaatgcagattctggtatt 442
Query: 243 ctggccaaga 252
||||||||||
Sbjct: 443 ctggccaaga 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
