BAC Information

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BAC

Clone NameMSMg01-433H24
Chromosome9 (Build37)
Map Location 70,103,568 - 70,103,851
singlet/doubletsinglet
Overlap geneMyo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433H24.T7 (MSMg01no433_h24.b1)MSMg01-433H24.TJ (MSMg01no433_h24.g1)
ACCAG525268AG525269
length755781
length of high quality
(start - end)
327 (68 - 394)365 (69 - 433)
definitionCHROMAT_FILE: MSMg01no433_h24.b1 PHD_FILE: MSMg01no433_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:36 2005CHROMAT_FILE: MSMg01no433_h24.g1 PHD_FILE: MSMg01no433_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAATCCGCGGAATTCAG
GACAGTTACTCAAGCAGGGCAGGAACCTGGAGGCAGTAGCTGATGCAGAA
GCAATGGAGGGGTACTGCCTACTGGCTTCCTCCCCTTGGCTTGCTCAGCC
TGCTTTCTTATAAACCTGTGACTAGTCCAGGGATAGCATCACCCACAATG
GCCTGGGCACTCCTCCATCAGTCACTAATTTAAAAAATGCCTTATAGCTG
AATCTCTTAGAGGCATTTTCTCAATTGAAATTTCTTCCTTTTTGATAATC
CTAGCTTGCATCAAGTTGACATAAAACTGGCGAGCACAAGAGTTAATAAT
AACTACATTTTATGTCTAACTCTGGCTTATACACATACACACACACACAC
ACACTTACATACATGTACTGCAAGAGCATGAATAATGTTGTCACAGATGC
CCTAACAATATTGCCCCACTTCGCATGTTGGTCAACCCCTTACTCCCCCT
ACCCCTTGTTTGCACGTTTTATAACCCCCACATTTCTTTCCCCTCTTTTT
TCTCTTCATTACTCTTCCTACTTTTCTTCCCTCAACACACACTTTCCCGT
TTCTTTTCTTACTCCTTCATACTATATTCCCCCTCCTCCTTTTCCTCTTT
TTCTCCTCCCTTTCTTCTTTTCTTTTATCCCCCCCTCACTCTCCTTCTCT
TCTTACTTCTCCCCCCCTATCAACTTCGTTTTTTCCCCTCTCTCCTCTCC
CCTTN
TGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGCCCCCCATCTCTCTCTACTGGCTTCCAC
CCCACTCTCCATAGAGAGGCTTAGCCCCAGGCTGCAAGGGTAAAGTCCAG
GCCGCAGGAGAGCAAAGGTCCCTCCCTCTGTAGGGTTGTCTATGTTGTTT
TGGGTGAGTGACACCACGAAGAACAGATGACCCTTCTTTCTGTTGTATAT
GACAAGGAAATGCTTTGTAAAGTGCAAATGGCTTTGCAAATGGAAGGCAC
ATGCTGAAGCAAAGGTTTTAAAAAAAACATTTTAAAAAAAAAAAAAAGCT
TTCTTACAAATTAAGCATTTTGCACCCTTCGAGGGAACAGCCCATCATGT
CTGGGAAATCACACATCTAACTTTTGAGGTTCTGCCGACCTGTGTAACAA
CCCCTATGCTTTCTTTCTTCCATCTACAGATGTAGCTATTTTCAGTGTAG
CCTTTAAGGACTGACTTCGTTGAACTTTTTCTGTGTTTTCCTTTTGGTCT
TTCGCTGTTTCCCCTTTTTTCCCCTTTCCCTTTGTGCTTTCCCTTTCCCA
CATTTCCCCTTCTGTCTTTCCTTTTTTTTGTCCCGTTCTTCTTTTCTTTC
ATCTACCTCCTCTTTCCCTTACCTTCGCCTTTCCTTCTTCTTCCTCCTTT
CCTTCTATTTCCCTCACATTCTCCTCGTCGCTTTACTTCAATTTCTTTTT
CCCTTTCTCCTCTTTTTTCCTTTTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_h24.g1 MSMg01no433_h24.g1 CHROMAT_FILE:
MSMg01no433_h24.g1 PHD_FILE: MSMg01no433_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:36 2005
         (365 letters)



>mm_chr9_70103368_70104132
          Length = 765

 Score =  458 bits (237), Expect = e-133
 Identities = 273/291 (93%), Gaps = 14/291 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgccccccatctctctctactggcttccaccccactctccatagagaggcttagcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgccccccatctctctctactggcttccaccccactctccatagagaggcttagcccc 260

                                                                       
Query: 61  aggctgcaagggtaaagtccaggccgcaggagagcaaaggtccctccctctgtagggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aggctgcaagggtaaagtccaggccgcaggagagcaaaggtccctccctctgtagagttg 320

                                                                       
Query: 121 tctatgttgttttgggtgagtgacaccacgaagaacagatgacccttctttctgttgtat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tctatgttgttttggatgagtgacaccacgaagaacagatgacccttctgtctgttgtat 380

                                                                       
Query: 181 atgacaaggaaatgctttgtaaagtgcaaatggct-ttgcaaatggaaggcacatgctga 239
           ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 381 atggcaaggaaatgctttgtaaagtgcaaatgg-tgttgcaaatggaaggcacatgctga 439

                                                              
Query: 240 agcaaaggtttt------aaaaaaaacattttaaaaaaaaaaaaaagcttt 284
           ||||||||          ||||||||||||  |||||||||||||||||||
Sbjct: 440 agcaaagg----ccaaaaaaaaaaaacatt--aaaaaaaaaaaaaagcttt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)