BAC Information

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BAC

Clone NameMSMg01-433J12
Chromosome9 (Build37)
Map Location 98,214,870 - 98,215,108
singlet/doubletsinglet
Overlap geneNmnat3
Upstream geneTrim42, Clstn2, LOC667298
Downstream geneRbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J12.T7 (MSMg01no433_j12.b1)MSMg01-433J12.TJ (MSMg01no433_j12.g1)
ACCAG525340AG525341
length860813
length of high quality
(start - end)
---240 (68 - 307)
definitionCHROMAT_FILE: MSMg01no433_j12.b1 PHD_FILE: MSMg01no433_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:43 2005CHROMAT_FILE: MSMg01no433_j12.g1 PHD_FILE: MSMg01no433_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGAGGACGAAAACGAATCACTATTCATGACCGTGCGCGGAATTCACTGG
TTTCAAAACAAGAGAGNAGGGGAGGGGCNAGACGGGNGACGCAAAGAACA
CCGCATTACCGGAAAGATCGACCTCAGAGCGGAAGAAGACTCACGACAAT
TGCATCACGGCACACCGGCATCACAACAGACCCCCGCGAAACCAGAAAGA
AGCCCAACCCCAGGAAAACGCCCCACCCCGCAACAGTTTACAGCCCACGA
CAGCACCGACGAACAGCGCCACCAAAAAAAGACCCCAAACCCCCCAAACA
CATTTTTTTTTTCCAAAAACGCACACAACCAACCAACCAACGGCCAAAAC
AATCCACACCCCAACCCAACCCATAGACCGAGCACAGGCCCACCCAAAGC
CAAAACTCAACACACGAACCCCCCCCCCCCAAAAAAACCCAAAAACGACA
ACCAAACCCGGACGCAAACACACACAACCCGACCCACCAAAAAACAGCCC
CACCACCAAACCACCCACAAAACAACCCAACACACCCCCCCCAAACCAAG
ATCGCCCCCCACCCACGCCAACATCCCCCATACAATGTTAGCCCTCCCCA
CCAACCACAACCCGAACAATCATACCCACCCAAACACACACCACCACACC
CTCAATAACCCCAACACACAACCCCAAAACCAAACCAAAGAATACCACAC
ATCACCAACCATATCCCAATCACACTCCAATCCCAACCGCCACCCATACA
AAAAACAACTACACCGCCCCCCCTACCCACCAACCAACAACAAACACATC
CAACCAACCGCCCACACCCAATACAACTCTTTTGTTCCCACACCCCACAC
ACCACCACAA
AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTCTTTACTTCAAAGTCACTGGCACAGGAAC
ACATACCAGGCAACCTCAGTGGTGACTCCCAAAGTTCTTGGGGAGATGAA
TCATTCAGACACATACATCCACGGATGCATCACACTTTTTGAGCTGGTAA
GGGACTGTAAAATGAACCTGATACAGCTCTGTTAGTGGAAGAGACATTCA
CTTTTAACTGCATAGTCAATTCTCAATTAACAAGGGTAATGGGGTGGAAG
GAGGTCTTTTTTTTTCCAAAAATCATGGTGAACATAAGACTATGGTCCTC
TCTCCCCTTCCTTGACTTTTGATTCATTTGCCTTGGAACGTTACCCTGCG
CCTTTTTATCCTCCCCCCCCTTTTTCCCTTTATTTCCTGTTCCCCTATTT
CCTCGTATTTCCCTGATCCCTCTCTCCCTTTTTTCCCTATTTTCCCCTTT
TTCCGCCCTTTCCTTTCCTTCCTACCTTTCCATCCCTTACGTCCCTTTCG
CCCTTCTCCTTCCTTCCTCTTATTTCCCCCTTCCCTTCCCCCTTTCTTCC
CTTTTTCCTTTCCCCTTTCCCCACTTTCTCGCTCCGTCCTTTTCCTTCTT
TCTCTCCCCCCCCTCAACTCCCCGCCTCTTCCATCTACCTTCTCTTTATT
CCCTCTCCTTTCCCATTCCCCTCTTCTCCTTCCTTCTTCTTCCCTTCCTT
TCCCCTCTTCCGTTTCTCCCAGTTGCCGCATCCATTTCTCTTCCCCTTTA
TCTTTTCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j12.g1 MSMg01no433_j12.g1 CHROMAT_FILE:
MSMg01no433_j12.g1 PHD_FILE: MSMg01no433_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:44 2005
         (240 letters)



>mm_chr9_98214670_98215309
          Length = 640

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctttacttcaaagtcactggcacaggaacacataccaggcaacctcagtggtgact 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ctttctttacttctaagtcactggcacaggaacacataccaggcaaccttggtggtgact 260

                                                                       
Query: 61  cccaaagttcttggggagatgaatcattcagacacatacatccacggatgcatcacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaaagttcttggggagatgaatcattcagacacatacatccacggatgcatcacactt 320

                                                                       
Query: 121 tttgagctggtaagggactgtaaaatgaacctgatacagctctgttagtggaagagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagctggtaagggactgtaaaatgaacctgatacagctctgttagtggaagagacat 380

                                                                      
Query: 181 tcacttttaactgcatagtcaattctcaattaacaagggtaatggggtggaaggaggtc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttttaactgcatagtcaattctcaattaacaagggtaatggggtggaaggaggtc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)