TCXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCT
TAAATTCACTCATTCATTCATTCATTCATTCATTTACTCAAATTAATTTA
ATCATCAGATTCTTACAAAGTCTTTTTTAAGAGATAGCTGTCAAAGAATG
TATGAAAAATATTTATTTAAAACTCTACAGATATTAAAGAAAACAGGTTA
GTGAAAGACAGACAGATAAATTGTAGTAAATGAGGTATGGGATGCAGAAG
GTATGTGTAACGATTAAAGTCCTGCTCTAATATGACTGCAACGCCATTCC
TCCTTCCTCCTTTTTTTTTTTTTTACTTCCACCTTCGTTCTGCTTTTACA
TCTCCCTCACCTTCTCTCCTCCACTATCTCTGTTTTCCCTACTTTTCCGT
ATCTCTCTTCTTCTCCTCGCCCCCCCACCCCTCCCTATTTCTCATCTATA
CTTCCTCCCTTTTTCACTACCCTTCCTCCTTTTTCTCTCCTCTTCCTTCC
TCCTCCTTAACTCCCATCACTTTCCCCCTTTTTTTTTCCCCCCCCCATTT
CTTTTCTCCCCTAATTTTTACTTTTCCTCTTCCTTTTTTCTTCATTTTTT
CCCTACCTCTACCACCTTTCCTCTTTATCTCCATCTATTACCCCAACCCC
AATCTTTTTTGTTCCTCCTCACCTCCTTTTCCCTTCTTTCTTCTTCCTGC
CCCCTTTCTTACTTTTATCTCTACATCCCCCCACCTCCCGCTCCTCCATC
ATCATTCTCTCCTTTCTCTCCTCTCCCTCCTTCTTCTCTCTTTTTTCTTC
TCCCTCTCCCTCTCTCCTCCTCTCG

CAGTGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATGATGTATTTATTAGCCTACTTGATA
ACACCCACCGACACTGAGGTTACCTTCGGATTTTTTACTGCTCCTTTCTC
CCAGATAAACTGACAGAATCATTTCAAGTGACCAGTCTCTGAACAAATGG
ATTGTTTCCTCTCTGACCAACAGTGCTGTTTGACCTCCTTCTAGCTCTTC
CATTTAATGCATATTCTTGTAGTAAGACTTTCATTAATGTGTGGACATCA
TTGCAGTAATACTTTCCTGACTCCCGTTAATATTTTCTCCTGACTGAAGC
TCTCACTTGATGAATATATTTGCTCCCTGTGCTCATTCCACATTTTCATT
CCAGGTTACTTCGTAAAACCTTTTCCAGTATTCAATTACCTCTTCTTGTC
CTCTGCATTTGTATTCTGACCGTTCCCCTTTTCGCCCTTCCATTCCTGCC
TCTTTCCCCCTTTCCTCCTTTCCCTTTCCTCTTTCTCTTTTTCCCTTCTT
TTCCCTTTCCTTCTCTTCTTTCCCTTTCCCCTTTCCATTTCTTCTTTACT
TCATTCTCTCCCCCCCTTCTCTCCTCCATCTTTCAATCTCTTCCCTTACC
TTTCCCTTTCCTTCCCTCCTTCTTCTTCCTACTTTTCCCCTCTCTTTCCC
CTCTTCCATTTACCTCCCATTATCTCTTCCATTACTTCTCCCTTTTTCTT
TTCCCCTTTG

Query= MSMg01no433_l08.b1 MSMg01no433_l08.b1 CHROMAT_FILE:
MSMg01no433_l08.b1 PHD_FILE: MSMg01no433_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:52 2005
         (195 letters)



>mm_chr9_33431345_33431939
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattcattcattcatttactcaaattaatttaatcatcagattcttacaaagtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcattcattcattcatttactcaaattaatttaatcatcagattcttacaaagtcttt 260

                                                                       
Query: 61  tttaagagatagctgtcaaagaatgtatgaaaaatatttatttaaaactctacagatatt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaagagatagctgtcaaagaatgtatgaaaaatatttatttaaaactctacagatatt 320

                                                                       
Query: 121 aaagaaaacaggttagtgaaagacagacagataaattgtagtaaatgaggtatgggatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaaaacaggttagtgaaagacagacagataaattgtagtaaatgaggtatgggatgc 380

                          
Query: 181 agaaggtatgtgtaa 195
           |||||||||||||||
Sbjct: 381 agaaggtatgtgtaa 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no433_l08.g1 MSMg01no433_l08.g1 CHROMAT_FILE:
MSMg01no433_l08.g1 PHD_FILE: MSMg01no433_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:53 2005
         (278 letters)



>mm_chr9_33620922_33621599
          Length = 678

 Score =  491 bits (254), Expect = e-143
 Identities = 272/278 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatgatgtatttattagcctacttgataacacccaccgacactgaggttaccttcggat 60
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 478 ccatgatgtatttattagcctactcgataacacccacagacactgaggttaccttcggat 419

                                                                       
Query: 61  tttttactgctcctttctcccagataaactgacagaatcatttcaagtgaccagtctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttttactgctcctttctcccagataaactgacagaatcatttcaagtgaccagtctctg 359

                                                                       
Query: 121 aacaaatggattgtttcctctctgaccaacagtgctgtttgacctccttctagctcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aacaaatggattgtttcctctctgaccaacagtgctgtttgacctccttctagctcttcc 299

                                                                       
Query: 181 atttaatgcatattcttgtagtaagactttcattaatgtgtggacatcattgcagtaata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 298 atttaatgcatattcttgtagtaagactttcattaatgtgtggacatcattgcagtaaga 239

                                                 
Query: 241 ctttcctgactcccgttaatattttctcctgactgaag 278
           |||||||| ||||| |||| ||||||||||||||||||
Sbjct: 238 ctttcctggctccccttaagattttctcctgactgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)