BAC Information

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BAC

Clone NameMSMg01-433P22
Chromosome9 (Build37)
Map Location 101,394,604 - 101,560,223
singlet/doubletdoublet
Overlap genenone
Upstream geneNck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433P22.T7 (MSMg01no433_p22.b1)MSMg01-433P22.TJ (MSMg01no433_p22.g1)
ACCAG525647AG525648
length802749
length of high quality
(start - end)		295 (34 - 328)452 (65 - 516)
definitionCHROMAT_FILE: MSMg01no433_p22.b1 PHD_FILE: MSMg01no433_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:15 2005CHROMAT_FILE: MSMg01no433_p22.g1 PHD_FILE: MSMg01no433_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,394,604 - 101,394,892)(101,559,772 - 101,560,223)
sequence
NTCCTTCACTANACGANTCCTATATTTCAGAGGATCCGCGGAATTCTGCT
GGTTTTCCAGTTTTACAGCATTCTTTCCCAGTGATAATATGAGTAGTTCC
ACATGGTCCTGAATTTTTTGCTTCACTTTTAGCAGAGATGAAGTTTTGAC
CTCATTCTGTGACTGCACATTTAGCTGGTTGCTAATATTTTGCCATTATA
AACAATATTATGATAAATTCTCTCCATAAATTTTCAGAACTATATCCAGG
CCAAGCAGATCCTGAATTTTAGACCCATGGAAATGGTTTAACATAATAAA
TAAATGTTTATTACTTTAAGCCACTAAGTAATGGGATAGTTTGTTCTATG
GGTTATATGAATAGCCAACTTTGTCTCCTTTGACACACTTTTTAGAATTA
CTGATCTGCCTCCCCATTTGGTTCTCCGTTATCCCCCTCTGACCCTACCG
TACTTTCTTCTTTCCACCTCTTGCATTACTTTTCAGCGACCCCACTTCAA
CCCTGCCTCCCCCCATTTTATACCCCCCTCTCTCTCATCGCTCCCTTCAC
TACCCCTAGCCCTTCGCCAGCCATTCTATTCCCCCCAACAGCTCTCTGCT
CTCCTCATTTCTCCTTTTGAAACTCCTTCCCTATCATATATTCCCCTCTT
CCCTCCTCTTTCCTTCTTTTCCTCTCCTGCCCTTTTCCTTTTTTCTTCTC
TCTTCGCCCCCCTCTTACCACCTTCCATCATCTTCTTCTCTCTCTACGTC
TTAACAGAACTACATTCTTTTTTTATCTCCCTCCTCCTTCTACCTCCCTA
TG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACACATATGGAGGGAGGGTTCCATATGTAGATAGAA
TGAGCTGGGAACTTGGTGAGGATCTCCCGGATGGAGAGGGGACCAAAAGG
AAACACTCCATGGTTGAAAAGCTGAGGTGCGAAAAGAAGTGGAATTCTAG
CTATACCACTGAGCTAACCTCTGTCACTCGCAGACTCACTCGGCCTTCTC
CCTTTGTCCAAGAATGGGAGGTTCACTTCCCGTTCTTCACAACAGGTCCT
CCTGGTGAGTAAGAAAAGTTCTTGGCTCCTTTCTGAGAGAAAGCAGCCCC
GCAAGGCTTGTGAACAAGTGAGTGTGCTCCAACCTACTGATGCATCTTTG
AACTCTGATTTCACTTCTCAGGAGCCCAATTTCATTACAGCCAAGTGCTC
TGTGCGGCAGAGAGTGGCAGAGAGGGAAACAATGAAATTATACCCTCTTT
GTTTGGACTTCAATGGCATCACAAAGCACAGAAACTTTCCATGATATCAC
CTCCTCTTATTGCGAATATTTACTGCCTAAATCCCTTGAGTAAAATCTCC
TTTCTTTCACACTCTGTTCAATTTGGGGTTTCATTTTCCGGAATTTTATG
GACTGGACACCTACCCAAATGGTGGTGGAGTTTATCCCGCCAAACCCCCT
GGCGAGGGCCAATTTTAAAGGGCCCCCGCCTCTCCTATATTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_p22.b1 MSMg01no433_p22.b1 CHROMAT_FILE:
MSMg01no433_p22.b1 PHD_FILE: MSMg01no433_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:15 2005
         (295 letters)



>mm_chr9_101394398_101395092
          Length = 695

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattctgctggttttccagttttacagcattctttcccagtgataatatgagtagttc 66
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctgctggttttccagttttacagaattctttcccagtgataatatgagtagttc 266

                                                                       
Query: 67  cacatggtcctgaattttttgcttcacttttagcagagatgaagttttgacctcattctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacatggtcctgaattttttgcttcacttttagcagagatgaagttttgacctcattctg 326

                                                                       
Query: 127 tgactgcacatttagctggttgctaatattttgccattataaacaatattatgataaatt 186
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgactgtacatttagctggttgctaatattttgccattataaacaatattatgataaatt 386

                                                                       
Query: 187 ctctccataaattttcagaactatatccaggccaagcagatcctgaattttagacccatg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctctccataaattttcagaactatatccaggccaagcagatcctgaattttagacccatg 446

                                                            
Query: 247 gaaatggtttaacataataaataaatgtttattactttaagccactaag 295
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaaatggtttaacataataaataaatgtttattactttaagccactaag 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no433_p22.g1 MSMg01no433_p22.g1 CHROMAT_FILE:
MSMg01no433_p22.g1 PHD_FILE: MSMg01no433_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:16 2005
         (452 letters)



>mm_chr9_101559572_101560423
          Length = 852

 Score =  859 bits (444), Expect = 0.0
 Identities = 450/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatatggagggagggttccatatgtagatagaatgagctgggaacttggtgaggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acacatatggagggagggttccatatgtagatagaatgagctgggaacttggtgaggatc 593

                                                                       
Query: 61  tcccggatggagaggggaccaaaaggaaacactccatggttgaaaagctgaggtgcgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcccggatggagaggggaccaaaaggaaacactccatggttgaaaagctgaggtgcgaaa 533

                                                                       
Query: 121 agaagtggaattctagctataccactgagctaacctctgtcactcgcagactcactcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agaagtggaattctagctataccactgagctaacctctgtcactcgcagactcactcggc 473

                                                                       
Query: 181 cttctccctttgtccaagaatgggaggttcacttcccgttcttcacaacaggtcctcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttctccctttgtccaagaatgggaggttcacttcccgttcttcacaacaggtcctcctg 413

                                                                       
Query: 241 gtgagtaagaaaagttcttggctcctttctgagagaaagcagccccgcaaggcttgtgaa 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 412 gtgagtaagaaaagttcttggctccttcctgagagaaagcagccccgcaaggcttgtgaa 353

                                                                       
Query: 301 caagtgagtgtgctccaacctactgatgcatctttgaactctgatttcacttctcaggag 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caaatgagtgtgctccaacctactgatgcatctttgaactctgatttcacttctcaggag 293

                                                                       
Query: 361 cccaatttcattacagccaagtgctctgtgcggcagagagtggcagagagggaaacaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cccaatttcattacagccaagtgctctgtgcggcagagagtggcagagagggaaacaatg 233

                                           
Query: 421 aaattataccctctttgtttggacttcaatgg 452
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aaattataccctctttgtttggacttcaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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