BAC Information

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BAC

Clone NameMSMg01-434E16
Chromosome9 (Build37)
Map Location 94,603,250 - 94,603,350
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434E16.T7 (MSMg01no434_e16.b1)MSMg01-434E16.TJ (MSMg01no434_e16.g1)
ACCAG525872AG525873
length720748
length of high quality
(start - end)
475 (57 - 531)101 (73 - 173)
definitionCHROMAT_FILE: MSMg01no434_e16.b1 PHD_FILE: MSMg01no434_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:40 2005CHROMAT_FILE: MSMg01no434_e16.g1 PHD_FILE: MSMg01no434_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
GATGTCCCTGCTTCTGTTTAGCACTGTTGATAAACTAGCTGGATGGGACC
TGATCCTGAAATTACCATCTCTAGCACACCTGGGCCTAACTTTACTGTCC
TAGGCTAACCTTGAACTAAGGAATCTACCTGCCTTTGTATCTTTCTGAGA
AGCTGGCTCTTTACTGCGGCTGCTGTTGTTTCTTTGGATCTGTGACGCCC
CTCATATAACTCATATTGCATCCTTATTTTTTTTTCATGTTGAGAAATTA
TATATTTTTGAGCTCATGTTTTTAGAGTTCTTTTCCACAGCCTAAGGGCT
GACCTAAAGGGTGCAGTGTTTGCCATTCTGCTAAAGCACTAGCCACACCT
TTGCCTCCCAGACTCCTATAGGCCCGGATTGTTGTGGAGTCAGTAACATT
AATGGGAAGACATTCCTCGGATAAATGCATAAAAAAAAAAAAAAAAAAAA
GTACTTTATTATACCAACAAGCCTTGTGCCGGCAGCATCCAACTACACTC
CTGGAGGCCCATTTTCCACTGGTCCTGTCTCGGTCAGGAACCATGTCATT
CTGTCCCCACCAATGTCCTGCTGTACTATCAGGTCTCCGCAAGAGTCATA
AAGGCTCTTGATCCGCCATTCCACTTCTCTGTCATCTATCTTTGCGAACC
GTGCTTTTCATTGCATTGTT
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGAATCCAGGTAGAAGTGATACCTACTCC
TTCCATGTGGCTCCTACATCTTTGCTAACCTCTCTCTTCCCTTTCTCCCC
TAGTCCCTACAGTGTAACCTCCCTACCACTGCTNNNTTCATCTCACTGNN
GCTGAATCTGNNNNNTCTTTTTAAAGGAAAAAAAACTNNNTTAATATATC
AGTCCCAAGGNNNNNNNNNNNTCCTGTTTAGGTGTGTGGCGGGGGGAGGG
GGGTGTGTGTGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCTC
GCGGTTAAAANNNAAAACCCCCTAGAAAATATTTCGAAAAAACGGGCGGG
GGGGGGGGAGGAGAAAAATTTTCNNNNNNNNNTTTAAAANCCCCCTTTCA
AAAATATTTCCTAAAAAAAANNCCCAAAAAAAAAAAAAAAAGGGGGGCTG
GGGGGGGGGGGGGGGGGGGGGGGGGGTCCNNNNNNAAATTNNTTTNCTTC
TNNTNTTTTTATAAAAAGAAAAAATCTNNANNNANAAAATAANAAAANNN
NNAAAAAAANATANNNNNNTNNNNANNAAATTTTTTTTTTATTTNTTTTT
NNNNANNNNNNAATTANNNNNATANNTNATANNTTTTTTTATNNTTATAA
NNNATAAANNAAAAAAATTTATTATTTATTTAGGTGCCNNNTTGGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_e16.g1 MSMg01no434_e16.g1 CHROMAT_FILE:
MSMg01no434_e16.g1 PHD_FILE: MSMg01no434_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:40 2005
         (101 letters)



>mm_chr9_94603050_94603550
          Length = 501

 Score =  180 bits (93), Expect = 2e-50
 Identities = 99/101 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatccaggtagaagtgatacctactccttccatgtggctcctacatctttgctaacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaatccaggtagaagtgatacctactccttccatgtggctcctacatctttgctaacctc 242

                                                    
Query: 61  tctcttccctttctcccctagtccctacagtgtaacctccc 101
           ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 241 tcttttccctttctcccctagtccctacattgtaacctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)