Query= MSMg01no434_m07.b1 MSMg01no434_m07.b1 CHROMAT_FILE:
MSMg01no434_m07.b1 PHD_FILE: MSMg01no434_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:17 2005
(275 letters)
>mm_chr9_83403570_83404244
Length = 675
Score = 439 bits (227), Expect = e-128
Identities = 260/271 (95%)
Strand = Plus / Plus
Query: 5 gaattcctatgctttgcatgtttaaccataggagaagataggggtgcccagcatacctgg 64
|||||||||||| || ||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 205 gaattcctatgccatgaatgtttaaccataggagaagacagggctgcccagcacacctgg 264
Query: 65 tccatcctgcgataagatatctctgcacttttgtggttgtccccaggctgttctttggga 124
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 tccatcctgagataagatatctctgcacttctgtggttgtccccaggctgttctttggga 324
Query: 125 ggagcttgtgtcttatggcctagttccagggacttatggtctggtcctggagctggtgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagcttgtgtcttatggcctagttccagggacttatggtctggtcctggagctggtgcc 384
Query: 185 ctataaccttcttttcaaaatcaggtctagttcttaaatggggacaaatggggtttatct 244
|||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 385 ctataaccttcttttcaaaaccaggcctagtccttaaatggggacaaatggggtttatct 444
Query: 245 catcctttcactaggacctgctgtctttctt 275
|||||||||||||||||||||||||||||||
Sbjct: 445 catcctttcactaggacctgctgtctttctt 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no434_m07.g1 MSMg01no434_m07.g1 CHROMAT_FILE:
MSMg01no434_m07.g1 PHD_FILE: MSMg01no434_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:17 2005
(435 letters)
>mm_chr9_83557931_83558765
Length = 835
Score = 768 bits (397), Expect = 0.0
Identities = 427/447 (95%), Gaps = 18/447 (4%)
Strand = Plus / Minus
Query: 1 agtcgtgagcgtggtgttatcttcatttgggggaggctcacaattcttttctgtcagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agtcgtgagcgtggtgttatcttcatttgggggaggctcacaattcttttctgtcagaag 679
Query: 61 acagtgcaggcaggatactcttcaatgcaaacgttgc------aaaaaaaaaaaaattaa 114
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 678 acagtgcaggcaggatactcttcaatgcaaacgttgcaaaaaaaaaaaaaaaaaaattaa 619
Query: 115 gacaaaagaaggctttaaacacggagaggagaaaattctactttggtgggcagaagaaag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gacaaaagaaggctttaaacacggagaggagaaaattctactttggtgggcagaagaaag 559
Query: 175 ggaaacacccagacccgcccctccatgcaccggggaccgcacatattcagtagaccttcg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggaaacacccagacccgcccctccatgcaccggggaccgcacatattcagtagaccttcg 499
Query: 235 gaacctcgtttgt------attttttaaggtttaaaaatcgaaagcagtgccgtggcggc 288
||||||||||||| | |||||||||||||| ||||||||| |||||||||
Sbjct: 498 gaacctcgtttgtacaaaca------aaggtttaaaaatccaaagcagtgtcgtggcggc 445
Query: 289 ggtgcaaaccccgttgtgaacatagtttgaggaaagagatttcattagattgttacacca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtgcaaaccccgttgtgaacatagtttgaggaaagagatttcattagattgttacacca 385
Query: 349 ccaccaccaccccgcccacctttcccaaagtgtcgcctgtatttaggactcgctgcctgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaccaccaccccgcccacctttcccaaagtgtcgcctgtatttaggactcgctgcctgt 325
Query: 409 aatctttctgctctatttgctgcatga 435
|||||||||||||||||||||||||||
Sbjct: 324 aatctttctgctctatttgctgcatga 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
