BAC Information

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BAC

Clone NameMSMg01-434P11
Chromosome9 (Build37)
Map Location 9,001,456 - 9,001,827
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434P11.T7 (MSMg01no434_p11.b1)MSMg01-434P11.TJ (MSMg01no434_p11.g1)
ACCAG526380AG526381
length767805
length of high quality
(start - end)
379 (33 - 411)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no434_p11.b1 PHD_FILE: MSMg01no434_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:32 2005CHROMAT_FILE: MSMg01no434_p11.g1 PHD_FILE: MSMg01no434_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGACGCTATACGACTCCTACTCCCAGAGGATCCGCGGAATTCCTACA
TGTTCCCATCATGCTACTTTTGTACAATAATTGTTGCACAGAATGAAGTC
CATGCCAGAATGATCACACATACCAGTCTAGGTATGCTTCCTTCCAGAAA
AGGCACAGGATACTGAGCCACCATGCCACAACAAACATCACTTCCATTTC
TTTGAGGTTCTTGTTGCTTTCTGGCCTCAGTGTAGAGACTTAACCTTATA
TTTCTGCCTGTCTGTCCTGCAGAGGCTCTCAACCTGTGAATTGTGACTCC
TTTAACAGGTCTCTTATATCAGATATTCTGCATATCAGATATTTACATTA
TGATTCATAACAGTAGCAAAATTGAACTTATGAAGTAGCAATGAAATAAT
TTTATGGTTGGGGGGGGGGGTCTCTACACTATGAAGAACTTGTCCTAATA
TTCACGCAGATCTAATAATCCAACATCGGTATTGCTCTCCTAGATCTACC
CTCTTCTAACAAGAATTGTTCCATTCTGCTCCATTTTTCACTACGTTCTA
TATTTATCCTCTTTTTCCCATCTTCTCCTATTCTATTCTCCTTTCCTACC
CTTTTCTTCCTGATGTTCACTCTCTACCTCCCTCTCCTTCATCCCCCTTC
TTCTCCCATCGACAATACCTCTTTATTCTTTATCTTTCATTATTTGCCCT
TTTCTCACCGCCATTTATCTCCTATATCGCCCCACTCCTCACCATTCTTA
CAGAATGCACTCAACCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTTGGGAGGATTTTATTGAGTATTTTTAGA
TCGATATTCATAAGAGAAATTAGTCTGAAGTTCTCTTTCTTTGTTGGATC
TTTGAGTGGTTTAGGTATCAGAGTAATTGTGGCTTCCTAGAATGAATTGG
GTAGAGTACCTTCTGTTTCTATTTTATGGAATAGTTTGAGGAGAGTTGTG
TTGGNGCTGCCCTGCGGCTCTCATGTCTGGGATCCAGCATGGGAGGCATC
TTGGAGCTGACTTTTTTTTTACCAGGCAGAAGAGAGAGAGACGGAACCAA
GATCTTTATTCTGATCCAGGGTCAAATCTTTAATAATAATCCTGTGCTTT
ATATAGAGGGCCCCCCCATCCTCATGTCTTCTCAAGATTCTTGTGACGTT
GCCTTTATTTGTCTTTTAAGTAATAACCTCGTCTATGTTTTCTTCTTTAC
TGTCTCTCCTTCTAATTCCGTTTCGTCATATTTCCGTTAGTTCCCCTTTC
TTCGTTTTGCTTCTCCTTTTTCTTTTTTAACTCTCCTTAGTTGCCGTTAC
TCTTTTACCTCTTGTTCTGGCTTTCGTGCCCTCTTCTTTTCGTTCCTGTA
TCTGTTCTCTGTTCCGTTTTCATTCTGCAGTCATTACCCTGGTTTTCTTC
TTTTTTTGTTTCTCTCCTGCTTCCCCTTTTATTGCCCCCCGCCCTTTTTG
TTTGTTATTTCCGACCGTCCTTCTCCTATGCATACTCTTCTATTTTCTCC
TCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_p11.b1 MSMg01no434_p11.b1 CHROMAT_FILE:
MSMg01no434_p11.b1 PHD_FILE: MSMg01no434_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:32 2005
         (379 letters)



>mm_chr9_9001391_9002169
          Length = 779

 Score =  671 bits (347), Expect = 0.0
 Identities = 366/375 (97%), Gaps = 6/375 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcctacatg---ttcccatcatgctacttttgtacaataattgttgcacagaatga 64
           |||||||||||||   |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaattcctacatggaat---catcatgctacttttgtacaataattgttgcacagaatga 381

                                                                       
Query: 65  agtccatgccagaatgatcacacataccagtctaggtatgcttccttccagaaaaggcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtccatgccagaatgatcacacataccagtctaggtatgcttccttccagaaaaggcac 321

                                                                       
Query: 125 aggatactgagccaccatgccacaacaaacatcacttccatttctttgaggttcttgttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggatactgagccaccatgccacaacaaacatcacttccatttctttgaggttcttgttg 261

                                                                       
Query: 185 ctttctggcctcagtgtagagacttaaccttatatttctgcctgtctgtcctgcagaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctttctggcctcagtgtagagacttaaccttatatttctgcctgtctgtcctgcagaggc 201

                                                                       
Query: 245 tctcaacctgtgaattgtgactcctttaacaggtctcttatatcagatattctgcatatc 304
           ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||
Sbjct: 200 tctcaacctgtgaattgtgactcctttaacagggctcacatatcagatattctgcatatc 141

                                                                       
Query: 305 agatatttacattatgattcataacagtagcaaaattgaacttatgaagtagcaatgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agatatttacattatgattcataacagtagcaaaattgaacttatgaagtagcaatgaaa 81

                          
Query: 365 taattttatggttgg 379
           |||||||||||||||
Sbjct: 80  taattttatggttgg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)