BAC Information

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BAC

Clone NameMSMg01-434P20
Chromosome9 (Build37)
Map Location 84,795,071 - 84,795,495
singlet/doubletsinglet
Overlap genenone
Upstream geneBckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434P20.T7 (MSMg01no434_p20.b1)MSMg01-434P20.TJ (MSMg01no434_p20.g1)
ACCAG526398AG526399
length842763
length of high quality
(start - end)
232 (67 - 298)425 (71 - 495)
definitionCHROMAT_FILE: MSMg01no434_p20.b1 PHD_FILE: MSMg01no434_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:34 2005CHROMAT_FILE: MSMg01no434_p20.g1 PHD_FILE: MSMg01no434_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTATTCATAAACTTGAGAACAGCCTGTATTTTAGTCTTTGTGTTGTTCA
GTGTATATATTTTGAAATTTTCTGTTCTGCATAAGCAAGCTTAAGTTGTC
CGCCATGGGGCTTGGAGCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT
CCTCCTCCTCCTCCTCCTCCTGCTCCTCCTCCTCCTCTTCTTCCTCTTCT
GCCTCTTCATCCTCTTCTTTTTTTTTCTTTCTCATCGGCCCTTCGCTTCG
TCATGATATTTTTCTACCATTACATTATCGCTCGTCGAGCTCTGTCTTTC
TCATAATTCTTTATCTCTCACCCCAACCTACCTTCATCGATACCACTTCA
TCATCTCATCTACGTCATGCCTTGTCTCTTCTACACTCCTTTTATCTCTA
CTATCTCCAACTCTCCTTAATTAATATTTAACCCTCTTCTCCATTCATTT
ACCCCTAGAAATCATTTCATTCTTTACTACCTACACAATCTTCCTCAACT
AATACTCAGTAATACCTTACAATCAATCTCATCCTTCTTCATACTATAAA
ATCACTTCGTTCGTTCGATCTTTCTTCATACTTCTCGCTACTCTGCTCTC
CTTTCTCATTTCTATGGCTATTAATTTTCGTCGAATTAGATTTATATATC
CCTTAACTTCTCTCACCAGATCCATTCTCTCCCCACAGCAATATCTTTCT
CAATAACCGTCTACCTATATTCTTCAACATCCCCTCCCCCGG
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTATCACTCAGGGTATTAGGAGACTTCAA
ACTCTTTTATGAATATAAAACATACCTTTTGAACTAGCTTTAAAAAATGA
TTACATGTGTTAATCATTTCTTATAATGTTTATATTCAAGTCACTCAAGT
CTTTTAAGAGAACTTCCTTCTTATTTAAAATACAACTATAATATTAAATA
TTTCATAATATTTACAAAAATGACCTCAATATTTTATTATTTTGAAAAAG
GCTCCTAAAAGAAATATTTAAGGCAGTCTTTTCTATCTACATCATGTACA
ATTAAGCCACTTTTGAGTTAAATGTACTGTGGAAGAGTAACATTTAAATT
ATTTTTAATAGCAGACTAAATTTTCACTGTATAAAATATTGTATCATTTG
TTCCTGTGTGTGTATGTATGTGCAATATATATGTGGATCTCTGTAGAGGC
CAGAAGAAGACACTGNATACTCACGAGCTGGAGTCATAGGCAGATGTGAG
CACCCTACAACTAGGGGCTGGAAAATAAACTGAGGTCTTCTACAAGAGCA
AGAAATTGAACTTACCAGCTGATCCTTCTCTGCCAGCCCCAAAAAATGGT
TTCCGGAAGAATTAAAGAGCCCTTTAAATTTTTTTTGGTAAACAATTAAA
TCACAAAATTTGAAAAAAAAGGGGCTCCCCCAAAAGGGGGGGGAGAAAAA
AAAATTTGTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_p20.g1 MSMg01no434_p20.g1 CHROMAT_FILE:
MSMg01no434_p20.g1 PHD_FILE: MSMg01no434_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:34 2005
         (425 letters)



>mm_chr9_84794871_84795695
          Length = 825

 Score =  814 bits (421), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatcactcagggtattaggagacttcaaactcttttatgaatataaaacatacctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcactcagggtattaggagacttcaaactcttttatgaatataaaacatacctttt 260

                                                                       
Query: 61  gaactagctttaaaaaatgattacatgtgttaatcatttcttataatgtttatattcaag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactagctttaaaaaatgattagatgtgttaatcatttcttataatgtttatattcaag 320

                                                                       
Query: 121 tcactcaagtcttttaagagaacttccttcttatttaaaatacaactataatattaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactcaagtcttttaagagaacttccttcttatttaaaatacaactataatattaaata 380

                                                                       
Query: 181 tttcataatatttacaaaaatgacctcaatattttattattttgaaaaaggctcctaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcataatatttacaaaaatgacctcaatattttattattttgaaaaaggctcctaaaa 440

                                                                       
Query: 241 gaaatatttaaggcagtcttttctatctacatcatgtacaattaagccacttttgagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatatttaaggcagtcttttctatctacatcatgtacaattaagccacttttgagtta 500

                                                                       
Query: 301 aatgtactgtggaagagtaacatttaaattatttttaatagcagactaaattttcactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgtactgtggaagagtaacatttaaattatttttaatagcagactaaattttcactgt 560

                                                                       
Query: 361 ataaaatattgtatcatttgttcctgtgtgtgtatgtatgtgcaatatatatgtggatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaatattgtatcatttgttcctgtgtgtgtatgtatgtgcaatatatatgtggatct 620

                
Query: 421 ctgta 425
           |||||
Sbjct: 621 ctgta 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)