BAC Information

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BAC

Clone NameMSMg01-435P01
Chromosome9 (Build37)
Map Location 71,372,955 - 71,544,141
singlet/doubletdoublet
Overlap geneAA407270, LOC547043, LOC100040537, Cgnl1
Upstream geneSltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435P01.T7 (MSMg01no435_p01.b1)MSMg01-435P01.TJ (MSMg01no435_p01.g1)
ACCAG527126AG527127
length782756
length of high quality
(start - end)
351 (46 - 396)382 (85 - 466)
definitionCHROMAT_FILE: MSMg01no435_p01.b1 PHD_FILE: MSMg01no435_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:52 2005CHROMAT_FILE: MSMg01no435_p01.g1 PHD_FILE: MSMg01no435_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,372,955 - 71,373,300)(71,543,760 - 71,544,141)
sequence
NCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTGGCTTTGTTCGTGTCAGGTAAACATTCTACCCCACTGAACTAC
ATCCCAGTCTTTCTGTATGTATTCTGTTTCCTGGATCCCTGGCTGGCCTG
AGAACCTTTGATAGCAGGGGATTCTAAGACCCAGGGATGTCCTGTTAGGT
TTGTTTAGCCAGCTTCACCACATGGACTGTGTTGCTTGGACCTTGATAAC
AAGGTTATCAAGTTATCGGTTCAGGGAGTATGCTTCAAGACAGACTCTAA
CAAGCCAATAGAGATTAATTATCTATCATGGACTGATGAAACGTGTGCAC
TTCAAACATTTAGTTAACTCTCTTAATATATTTGTATCTGACCAACCAGG
TGTCACAAGTTTACTTGGGGGGAAAAGATCACTAAAAGTATTCCTGGTAT
GCATAGGGTTAACGACTCTTGAGGACCACCGCAAGCATGACCGGTTCCTT
CGTAGATTGTGTTCTGCCCTGCTCCCTTGTTGACCTCTTGCCTTCTTGTG
CCCCCCTCCGCTCCTTTTCTTGCCCCTCCCCCTGCACTTTTTTTTCCTAC
ACTCCTGTTGTCCTTGCTACTCCACCTTTATTTTTTCCCCCGTCTTTTTT
CCTTCTTGTGCCCTCGTTTTTTCTCCCCTATTGTCACTTGTTCTTCATCA
TTTTCCTCTCCTTTCCTCTTCCGCTCCCTTGTTTCCTTTCCCTTTCTCGC
TCCCCGTTTTCCTTGCCCCCTTTTTATATTTN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCTTTGTAGTG
AGTTAAAGTCAGATTAGGTTAAATGAGAACTTGTCTCAAAAGACAACAGC
AACAACACCTTAAAACTCAATTCATTTCCTGTTCCCGTTAAGACTGTGTG
AGGTGGGCCCTCATAGAAGGGACTGTTTCCAAGGACAGCAGCAAAAGGGC
TGTCTGCTAGGTCTGCTTGAGGGATTTACTGCTGCTGCTGAGGGGAGGAT
GCTGGCTTTGGTGTTACAGTGCAGGAAGATTGGCTGAAGGGTTTCACCGG
GAGGGCTTGTCCCAATGGAGGTGGGACATTTGGTAGCATCTACTGACTGT
ACTGAGTATCACGAGTGCAGTTTACAGCAGTCCCAGTGGGGTCCTGAGGA
CAAGGCTTTCAGGACACTCAGCCTTCCGCTGACCCAGAAAACCACCACAA
ATTCATATGCAGTGTGAAGAGAAAGTGTGGACACTTACCTAGGTGGGGAA
AGAGTACAAAATCCGAGCTGACCTCTTAAGAATATCAGAGTATCCTGCTC
CCCAACACACAGCTCTGCCCCCTCCTTTTCCCATAAACTTGCCGGGTGGT
GAGAGGAACTTTTTCCCCTTTTTTCTCTCCCCTAGGCAGCCCAGCAGGCA
TACAATTAAGGTGTATCAACAATTCCCTACTCTTCTATTATTCCCTCCCC
CCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_p01.b1 MSMg01no435_p01.b1 CHROMAT_FILE:
MSMg01no435_p01.b1 PHD_FILE: MSMg01no435_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:52 2005
         (351 letters)



>mm_chr9_71372750_71373500
          Length = 751

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctggctttgttcgtgtcaggtaaacattctaccccactgaactacatcccagtct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctggctttgttcgtgtcaggtaaacattctaccccactgaactacatcccagtct 265

                                                                       
Query: 66  ttctgtatgtattctgtttcctggatccctggctggcctgagaacctttgatagcagggg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttctgtatgtattctgtttcctggatccctggctggcctgagaacctttgatagcagggg 325

                                                                       
Query: 126 attctaagacccagggatgtcctgttaggtttgtttagccagcttcaccacatggactgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attctaagacccagggatgtcctgttaggtttgtttagccagcttcaccacatggactgt 385

                                                                       
Query: 186 gttgcttggaccttgataacaaggttatcaagttatcggttcagggagtatgcttcaaga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttgcttggaccttgataacaaggttatcaagttatcggttcagggagtatgcttcaaga 445

                                                                       
Query: 246 cagactctaacaagccaatagagattaattatctatcatggactgatgaaacgtgtgcac 305
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 cagactcaaacaagccaatagagattaattatctatcatggactgataaaacgtgtgcac 505

                                                         
Query: 306 ttcaaacatttagttaactctcttaatatatttgtatctgaccaac 351
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcaaacatttagttaactctcttaatatatttgtatctgaccaac 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no435_p01.g1 MSMg01no435_p01.g1 CHROMAT_FILE:
MSMg01no435_p01.g1 PHD_FILE: MSMg01no435_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:52 2005
         (382 letters)



>mm_chr9_71543498_71544279
          Length = 782

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttggctttgtagtgagttaaagtcagattaggttaaatgagaacttgtctcaaaagac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 644 tcttggctttgtagtgagttaaagtcagattaggctaaatgagaacttgtctcaaaagac 585

                                                                       
Query: 61  aacagcaacaacaccttaaaactcaattcatttcctgttcccgttaagactgtgtgaggt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 584 aacagcaacaacaccttaaaactcaattcgtttcctgttcccgttaagactgtgtgaggt 525

                                                                       
Query: 121 gggccctcatagaagggactgtttccaaggacagcagcaaaagggctgtctgctaggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gggccctcatagaagggactgtttccaaggacagcagcaaaagggctgtctgctaggtct 465

                                                                       
Query: 181 gcttgagggatttactgctgctgctgaggggaggatgctggctttggtgttacagtgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcttgagggatttactgctgctgctgaggggaggatgctggctttggtgttacagtgcag 405

                                                                       
Query: 241 gaagattggctgaagggtttcaccgggagggcttgtcccaatggaggtgggacatttggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 404 gaagattggctgaagggtttcaccgggagggcttgtcccaatggaggtgggacgtttggt 345

                                                                       
Query: 301 agcatctactgactgtactgagtatcacgagtgcagtttacagcagtcccagtggggtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agcatctactgactgtactgagtatcacgagtgcagtttacagcagtcccagtggggtcc 285

                                 
Query: 361 tgaggacaaggctttcaggaca 382
           ||||||||||||||||||||||
Sbjct: 284 tgaggacaaggctttcaggaca 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)