BAC Information

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BAC

Clone NameMSMg01-437B07
Chromosome9 (Build37)
Map Location 70,067,955 - 70,068,359
singlet/doubletsinglet
Overlap geneMyo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437B07.T7 (MSMg01no437_b07.b1)MSMg01-437B07.TJ (MSMg01no437_b07.g1)
ACCAG527997AG527998
length758855
length of high quality
(start - end)		542 (51 - 592)---
definitionCHROMAT_FILE: MSMg01no437_b07.b1 PHD_FILE: MSMg01no437_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:20 2005CHROMAT_FILE: MSMg01no437_b07.g1 PHD_FILE: MSMg01no437_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAAAGCGTGCCACCAGACATGGCTTGCCCCAACCCCCAG
CCCTATGAGTTCTGGAAAATGAACTCAGGTCCTCGGTTTTAAGGCAAGCA
GTCTAGTGACTGAGCTCATTTCCTAGTCTTCCTACTTCATTTAAATTTAT
TTATTTATTTATTTTTATTTTTATGTGCATTGCTGTTTTGTCTGAGTGTA
TGTCGATCTGAGGGTGTCAGACCCCTGGAACTGGAGTTACTAGCAGCTGT
GAGCTGCCATGTGGGTGCTGGGAATTGAACCTGGGTCCTCTGGAAGAGCA
GCCAGTGCTCTTAACCTATGAGCCATCTCTCCAGCCCCTTCCCATTGAAT
TTTAAAATAGGATCCTATACTAGTATAGCATGTCACAAAATGTCACACAG
GCAGAATGGACTGGGCAGGAGATGCTGGATGCAGAGAAGTCACCCTGGAC
AGTAATTGATCAGAAAAAAAAAAACAAAAAAACCTAAAATGTGCAGAACT
CTGTGATCTTTGCAGATGGAGTGAGACAGAATTTTGAAAGCAATAACTTG
CAACTGTGAGATACAGAAAAGTGGATTCGGTGTTGGCTTCTTAGGAGAAC
TAGCAGGCAAGCTGGGGATGTAGCGCAAGAGTGGATGCTAGCTACAGACA
AGGTGATAGTAATCAACCTCCGAGGCTGAAATGAAACCTCCCTGGGTTCC
ATGAGGCN

CTTCTTACCNNNNNNNNACNNNNAAGATAGGGAGTAGTTAAGCTTNATAA
TTAATTATTCAGCTCAACACACCTCTGCAACTTGNCCCTAGCCATTAATC
TAAGATAATCAGATTATCATTTCGATAAACACGTCTCGACACAGCCCCCC
CTCTTTTTTCGCCTAAAGGTATAATGGGGGTTAAGGCCCTGGTGCGGTTC
CGTCCCCTGGTTTCTTTCCCCCAACAATTTTTATGTGTGGGGAAAACCTT
TAATACCAAATTGTTTTTTCCTCCCCCTCTAAAAAATTTCCCTTCTTCTC
CCCCCCAGTTGGGGCTCTTTACTATCCGGGCGCCCTCTCATATACTACTT
ATCAGCTCGCCCTTCCCTTTCTTACTTTCTACCTTTCTTCCATACCCTAA
AAAAAAAAATCGCTTGGGTCCTCAAAAAATTTCGGTCCCTTCTTTTCTCC
CCCCCATCTGGTGGTCTCCACATTTACCCGGGGGCGTACTTTCCTATACA
AACCTTACTCTCTCTGTTTGCTTTTTAGAGGGGGAACTTCTATTTCCTTT
ATCTACCACGTCTTTTCCCACCCACTATAACACCCAATAGACGTTGCTGA
TAAGCTCCCCGTCTATTATATCAAATAAACTAAACTTACTCTATTCCTTA
TACCCATCAATATACCCTACTTATCGCGATCCACCGTTTTTACCCCACCT
CTCCTTTCCCCCCTCCATTTACACCCTCTCTTCTATTCTCAATATCCCCC
TCCTCCTCCTCCTTCTTCCTCCCTCTTTCATCCCTCCCCCACTATTATTT
TCTATCACGCCCCTTCCCTTCCCTTCTCTCACAATACCCTCTTCTTCCTT
TCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_b07.b1 MSMg01no437_b07.b1 CHROMAT_FILE:
MSMg01no437_b07.b1 PHD_FILE: MSMg01no437_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:20 2005
         (542 letters)



>mm_chr9_70067417_70068359
          Length = 943

 Score =  675 bits (349), Expect = 0.0
 Identities = 393/411 (95%), Gaps = 11/411 (2%)
 Strand = Plus / Minus

                                                                       
Query: 137 tcatttaaatttatttatttatttatttttatttttatgtgcattgctgttttgtctgag 196
           ||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct: 943 tcatttaaa-ttatttatttatttatttat-tttttatgtgcattggtgttttgtctgag 886

                                                                       
Query: 197 tgtatgtcgatctgagggtgtcagacccctggaactggagttactagcagctgtgagctg 256
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 885 tgtatgtcaatctgagggtgtcagacccctggaattggagttactagcagctgtgagctg 826

                                                                       
Query: 257 ccatgtgggtgctgggaattgaacctgggtcctctggaagagcagccagtgctcttaacc 316
           ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 825 ccatgtaagtgctgggaattgaaccagggtcctctggaagagcagccagtgctcttaacc 766

                                                                       
Query: 317 tatgagccatctctccagccccttcccattgaattttaaaataggatcctatactagtat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tatgagccatctctccagccccttcccattgaattttaaaataggatcctatactagtat 706

                                                                       
Query: 377 agcatgtcacaaaatgtcacacaggcagaatggactgggcaggagatgctggatgcag-- 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 705 agcatgtcacaaaatgtcacacaggcagaatggactgggcaggagatgctggatgcagag 646

                                                                       
Query: 435 -agaagtcaccctggacagtaattgatcagaaaaaaaaaaacaaaa--aaacctaaaatg 491
            ||||||||||||||||||||||||||||||||||||||   ||||  ||| ||||||||
Sbjct: 645 aagaagtcaccctggacagtaattgatcagaaaaaaaaa---aaaactaaa-ctaaaatg 590

                                                              
Query: 492 tgcagaactctgtgatctttgcagatggagtgagacagaattttgaaagca 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgcagaactctgtgatctttgcagatggagtgagacagaattttgaaagca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space:   496356
Effective search space used:   496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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