BAC Information

Click to search

BAC

Clone NameMSMg01-437I21
Chromosome9 (Build37)
Map Location 110,126,970 - 110,217,941
singlet/doubletdoublet
Overlap geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103
Upstream geneFbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30
Downstream geneScap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437I21.T7 (MSMg01no437_i21.b1)MSMg01-437I21.TJ (MSMg01no437_i21.g1)
ACCAG528359AG528360
length768784
length of high quality
(start - end)		517 (44 - 560)505 (71 - 575)
definitionCHROMAT_FILE: MSMg01no437_i21.b1 PHD_FILE: MSMg01no437_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:59 2005CHROMAT_FILE: MSMg01no437_i21.g1 PHD_FILE: MSMg01no437_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,126,970 - 110,127,490)(110,217,440 - 110,217,941)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGGTGTCGCCTGGATTGCTTTTCAGATATAAGTCATATGAGTAC
CTAATTCAGCTGTCAGCCAACAGAAGCATGTGTGTTAGCTAGCATCTGCA
CACATTTCTATTGTACACTCTTGTATGTATTGGATTGAGAAGAGTTATAA
AATACACAGATGCTCATATTAGTAGATGATGCCAAAATGTTTCTAGAACT
CTAGGCCTGTTTAAACTCTTATCCTATGAATATAGTCATTTTATGTTTGA
CAATTTGATTTTGTTTTGGGTTTTTTGCTTAAATCTCTGTTAGTAAAATT
AACAACAGCATCCAAAGTTGGTGGTGTGTCTACAATCCCTGTATTCGGGA
AGCAAGTTTTTTGTTATGCTAGCCAGAGGTACATAACAAATTAACTTCTA
AATAGAGGGACAAACAGACAGGCAGACAGAACCAACCAGGCAGACAGGTT
GGATCGTGTGCACTTATAACCCCCAGAATTCAGTAGAGAGACTGGAGATT
TCACTATTAATTCTAGGGCAGGTAGGACTACATAATAAAACTTGTCTTTA
AAGAGGAAAAGGAAGCTGATTGTTTGTCTTTCCCCTTTAACTCCAGCTTC
TTGGACTCACAGTCCTACGTTTTTGATTCTGATGCCCTCCCTGGTATTTT
CACCTGCCTCCTCCTTTCCCCTCTCTTTTCTACAATCCCCGCTTCTATTA
TTCCCGCCCCATTTTTTN

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTATCCCATTGTGTCTGCCTCCCGAGTGC
TAGGATTACAGGCATGTACCACCATGCCCAGCTCTACAAATGTTTATCTG
GGACAAAGTGACACCAAGGGAGGCTGGAGAAGGCAAAGAACTGTATGACT
GTCTTTGGCCATCTGGAAAAACACACACACACACACACACACACACACAA
GTAATTTTTACTTTACTCCAATTCAAGTCTTTTCTATGGCCTACCAGGTA
CTAAGGTAAAATTTAGGGGCTACAAAAACTGAACAAGCCTTGAGTCCCTG
AAGAGACATTATAAAGATCTGTCACGGTGGTCCATACCTATAGTCCCAAC
TACCATAGAAACAGGAGAATAGAAAGCTGGAGGCCAGCATGGGGAAGGCA
GTCTCAATCCAGGAGCTGAGGCCCCTGGATGAACAAGTCAGAATGAGCAG
GTGAGAGAGGCCTCCCCAGCACATCCTGAGCTGCAAGAGGAAGTTGAGCA
GCATCCAAGCATCTTGGTGAGGGGCGTGGCCTATGGTTTGCTGGAATACA
GGCAGATTTGACAGACCTCTGACACATGGTGATCCACTCATCCCCACCTT
TCTTTGTGCGATGCTGTTAACTGTCCTCTTCCCACCATTGTGAAATATGA
AACTCCTACAATTGCCCTTGGTCCACTTGTTTATTCTTACACCTTCACCT
CCCACCCAACATTTTTGCTCCTTCTCCGTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_i21.b1 MSMg01no437_i21.b1 CHROMAT_FILE:
MSMg01no437_i21.b1 PHD_FILE: MSMg01no437_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:59 2005
         (517 letters)



>mm_chr9_110126774_110127690
          Length = 917

 Score =  940 bits (486), Expect = 0.0
 Identities = 509/522 (97%), Gaps = 10/522 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttggtgtcgcctggattgcttttcagatataagtcatatgagtacctaattc 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattcttttggtgacggttggattgcttttcagatataagtcatatgagtacctaattc 256

                                                                       
Query: 65  agctgtcagccaacagaagcatgtgtgttagctagcatctgcacacatttctattgtaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agctgtcagccaacagaagcatgtgtgttagctagcatctgcacacatttctattgtaca 316

                                                                       
Query: 125 ctcttgtatgtattggattgagaagagttataaaatacacagatgctcatattagtagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcttgtatgtattggattgagaagagttataaaatacacagatgctcatattagtagat 376

                                                                       
Query: 185 gatgccaaaatgtttctagaactctaggcctgtttaaactcttatcctatgaatatagtc 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatgccaaa-tgtttctagaactctaggcctgtttaaactcttatcctatgaatatagtc 435

                                                                       
Query: 245 attttatgtttgacaatttgattttgtttt---------gggttttttgcttaaatctct 295
           ||||||||||||||||||||||||||||||         |||||||||||||||||||||
Sbjct: 436 attttatgtttgacaatttgattttgttttttttgttttgggttttttgcttaaatctct 495

                                                                       
Query: 296 gttagtaaaattaacaacagcatccaaagttggtggtgtgtctacaatccctgtattcgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gttagtaaaattaacaacagcatccaaagttggtggtgtgtctacaatccctgtattcgg 555

                                                                       
Query: 356 gaagcaagttttttgttatgctagccagaggtacataacaaattaacttctaaatagagg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaagcaagttttttgttatgctagccagaggtacataacaaattaacttctaaatagagg 615

                                                                       
Query: 416 gacaaacagacaggcagacagaaccaaccaggcagacaggttggatcgtgtgcacttata 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gacaaacagacaggcagacagaaccaaccaggcagacaggttggatcgtgtgcacttata 675

                                                     
Query: 476 acccccagaattcagtagagagactggagatttcactattaa 517
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acccccagaattcagtagagagactggagatttcactattaa 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_i21.g1 MSMg01no437_i21.g1 CHROMAT_FILE:
MSMg01no437_i21.g1 PHD_FILE: MSMg01no437_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:59 2005
         (505 letters)



>mm_chr9_110217061_110217964
          Length = 904

 Score =  942 bits (487), Expect = 0.0
 Identities = 500/505 (99%), Gaps = 3/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatcccattgtgtctgcctcccgagtgctaggattacaggcatgtaccaccatgccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 attatcccattgtgtctgcctcccgagtgctaggattacaggcatgtaccaccatgccca 822

                                                                       
Query: 61  gctctacaaatgtttatctgggacaaagtgacaccaagggaggctggagaaggcaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gctctacaaatgtttatctgggacaaagtgacaccaagggaggctggagaaggcaaagaa 762

                                                                       
Query: 121 ctgtatgactgtctttggccatctggaaaaacacacacacacacacacacacacacacaa 180
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 761 ctgtatgactgtctttggccatctggaaaa--acacacacacacacacacacacacacaa 704

                                                                       
Query: 181 gtaatttttactttactccaattcaagtcttttctatggcctaccaggtactaaggtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtaatttttactttactccaattcaagtcttttctatggcctaccaggtactaaggtaaa 644

                                                                       
Query: 241 atttaggggctacaaaaactgaacaagccttgagtccctgaagagacattataaagatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atttaggggctacaaaaactgaacaagccttgagtccctgaagagacattataaagatct 584

                                                                       
Query: 301 gtcacggtggtccatacctatagtcccaactaccatagaaacaggagaatagaaagctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtcacggtggtccatacctatagtcccaactaccatagaaacaggagaatagaaagctgg 524

                                                                       
Query: 361 aggccagcatggggaaggcagtctcaatccaggagctgaggcccctggatgaacaagtca 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 523 aggccagcatggggaaggcagtctcaatccagaagctgaggcccctggatgaacaagtca 464

                                                                       
Query: 421 gaatgagcaggtgagagaggcctccccagcacatcctgagctgcaagaggaagttgagca 480
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaatg-gcaggcgagagaggcctccccagcacatcctgagctgcaagaggaagttgagca 405

                                    
Query: 481 gcatccaagcatcttggtgaggggc 505
           |||||||||||||||||||||||||
Sbjct: 404 gcatccaagcatcttggtgaggggc 380



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 151 acacacacacacacacacacacacacaca 179
           |||||||||||||||||||||||||||||
Sbjct: 223 acacacacacacacacacacacacacaca 195



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 151 acacacacacacacacacacacacacaca 179
           |||||||||||||||||||||||||||||
Sbjct: 225 acacacacacacacacacacacacacaca 197



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 151 acacacacacacacacacacacacacaca 179
           |||||||||||||||||||||||||||||
Sbjct: 227 acacacacacacacacacacacacacaca 199



 Score = 54.9 bits (28), Expect = 1e-11
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 151 acacacacacacacacacacacacacac 178
           ||||||||||||||||||||||||||||
Sbjct: 221 acacacacacacacacacacacacacac 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space:   442530
Effective search space used:   442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |