BAC Information

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BAC

Clone NameMSMg01-437O04
Chromosome9 (Build37)
Map Location 91,401,472 - 91,401,857
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437O04.T7 (MSMg01no437_o04.b1)MSMg01-437O04.TJ (MSMg01no437_o04.g1)
ACCAG528611AG528612
length778764
length of high quality
(start - end)
385 (79 - 463)456 (80 - 535)
definitionCHROMAT_FILE: MSMg01no437_o04.b1 PHD_FILE: MSMg01no437_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:26 2005CHROMAT_FILE: MSMg01no437_o04.g1 PHD_FILE: MSMg01no437_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTTTCATGTACCTCAAACTTCTTCTAGTCCATTAGTGTTGA
GATAATAATTTTTGAGGAATTGTGTTTCATGTTGTTTTGATTTTAATGTT
TCTTGCTTTTGTGTACTGGGCCTAGCACATCTGGGACCAACAATGGTTGA
TTTTTAAAAAAACATCATTTTTTTCCCCAGTGGAATTCTTTATAATGCTT
ACATGGGACGAGACTGCATTAGGTTGTGGTATTCTTTCTCTTTGTATAGA
GTATAGCTAAGTAGCCAAACCTTGTGCTTATGTGCTTAGGGTACTGTGAA
TGATGTACAGTACCACTCTGATAGTGTTTTGTTAGTGCAGAAGCAACATC
AACTTATGGATAAGCCTACCTTGAAAATGTAGTGATAACCATTAAAAACA
ATTGCCTCTTCATCTCCAACACCTTCTAGAGAATACAGAGAACAAGTGTG
GCCTATATATATATACATATATATATACTGGGATACTAGCTACTACCGTG
GGCACAGATTGACAATGAAATCTACTATGACTGCGGATTTTATTTCCCAC
CTTTCTTATCTCGATCATCTCCTACATCCCCCTCTTATCGTTCCTTTCCT
TCCATACTCCTCTTTTCCCCCCCCTTCTTCTTCCTTCCTTTTCCTTCTAA
TTTTTTACCACCTCTTCCCCCCCTCCCCCTTTCCCCTTTTCTTCTTTCCT
CCCTTTTCTATTCCCCTTCCTCTTTTTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCACCAGAGAAAT
GCAAATCAAAACAACCCCAGTCAGAATGGCTCCATCTCACACCAGTCAGA
ATGGCTAAGATCAAAAATTAAGGTGACAGCAGATGCTGGCGAGGATGTGT
AGAAAGAGGAAAACTCCTCCATTGTTGGTGGGACTGCAAGCTTGTACAAC
CACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGATGTAGTACTA
TCTGAGGATCTAGCAATACCTCTCCTGGGCATATATCCAGAAGATCCCCC
AACCGGTAAGAAGGACACATGCTCCACATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTGAACAGAGGAATGGA
TACAAAAAATGTGGTACATTTACACAATGGAATACAACTCAGCTATTAAA
AGGAATGAATTTGTGAAATTCCTAGGCCAATGGTTGGACCTGGAGGGCAT
CATCCTGAGTGAGGTAACTGGATCCCAAAAGAACTCCTATGATTTGTCCT
CCCTGAAAAGTGGATATTATTCCTAAAACCTATTTTAGTGAGAAATTTAG
GTACCATTTGGGGATTTTCCCGCGAACTGGATAATATTTGTTTTCTTTCC
GGCGGTCTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_o04.b1 MSMg01no437_o04.b1 CHROMAT_FILE:
MSMg01no437_o04.b1 PHD_FILE: MSMg01no437_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:26 2005
         (385 letters)



>mm_chr9_91401272_91402057
          Length = 786

 Score =  723 bits (374), Expect = 0.0
 Identities = 383/386 (99%), Gaps = 1/386 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctagtccattagtgttgagataataatttttgaggaattgtgtttcatgttgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctagtccattagtgttgagataataatttttgaggaattgtgtttcatgttgtttt 260

                                                                       
Query: 61  gattttaatgtttcttgcttttgtgtactgggcctagcacatctgggaccaacaatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattttaatgtttcttgcttttgtgtactgggcctagcacatctgggaccaacaatggtt 320

                                                                       
Query: 121 gatttttaaaaaaacatcattttttt-ccccagtggaattctttataatgcttacatggg 179
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gatttttaaaaaaacatcattttttttccccagtggaattctttataatgcttacatggg 380

                                                                       
Query: 180 acgagactgcattaggttgtggtattctttctctttgtatagagtatagctaagtagcca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgagactgcattaggttgtggtattctttctctttgtatagagtatagctaagtagcca 440

                                                                       
Query: 240 aaccttgtgcttatgtgcttagggtactgtgaatgatgtacagtaccactctgatagtgt 299
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccttgtgctcatgtgcttagggtactgtgaatgatgtacagtaccactctgatagtgt 500

                                                                       
Query: 300 tttgttagtgcagaagcaacatcaacttatggataagcctaccttgaaaatgtagtgata 359
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tttgttagtgcagaagcaacatcaacttatggataaacctaccttgaaaatgtagtgata 560

                                     
Query: 360 accattaaaaacaattgcctcttcat 385
           ||||||||||||||||||||||||||
Sbjct: 561 accattaaaaacaattgcctcttcat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space:   292152
Effective search space used:   292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)