BAC Information

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BAC

Clone NameMSMg01-438D01
Chromosome9 (Build37)
Map Location 40,297,957 - 40,430,797
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
Downstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438D01.T7 (MSMg01no438_d01.b1)MSMg01-438D01.TJ (MSMg01no438_d01.g1)
ACCAG528843AG528844
length791773
length of high quality
(start - end)		396 (40 - 435)468 (68 - 535)
definitionCHROMAT_FILE: MSMg01no438_d01.b1 PHD_FILE: MSMg01no438_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:52 2005CHROMAT_FILE: MSMg01no438_d01.g1 PHD_FILE: MSMg01no438_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,297,957 - 40,298,339)(40,430,330 - 40,430,797)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAACTGAGATGAATTCCTGCAAGCGATGGGCTGTGAGTTGGAGGGAAGAG
ACGAAGGGTGTATTTGAGAGGATGTTGTTACTGTTGCAGGGTGTTTTATT
CTCAGTACTGGTGCCCAGGATTTCCCCACACTAGGAAAGTACTCTACCAC
TGGATTATACCTTCAATCTGAATAAAGGACATTTGACATCATCACTGCTA
AAAACACACAAAACAGGGCATAGTGGAGCACGCCTTCAATCTCTGCACTT
GGGGAGCAGAAGCAGGTAGATCTCTATGAGTTCCAGGATACATAGTGAAT
CTCTGTCTCTAAAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATTTTGTNNNNTTTTTTTTTTT
GTTTTTTTTTTTTTTTTGTTTTTGTTTTTCTTTTTTTTTTNTCTTTTTCC
TCCTCTTCTTTTTTTCTTCTTTTCTCTTCTTCCTCCGTTTCTACTCTCTT
CTCTTTTCTTCTTCTTTTCTTCTTTTATTTTTTTTTTTTTTTTTTTCTTC
GCTTTCCGTTCTCTCTCCCTTTTCTTTCTCTCCCCCTTCCTTATTTCATT
TATTTTTTAATATAATCTTTCCCCATTCTTCTTTCTCCTTTTATTTATCC
TTCTTCTTCTTTCTTTTTTTTTTCTTTTTTATTTTTTTCTCTCTTTCATA
TTATTTTTTTTATATTATTCTTTTTATATTATTTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGACTGAGAATATATATATATATATACATATA
TATATAGGATATGCTTTAGACCCAAGCTCCTTATACGCCCCGCTTTGACT
TTCCAGCAAGTTGTTTGCTCAGATAATCACTGCACTTGCAAAGATGTAAG
AATCAACCATTAAATTAACTGCTTTTCATTCCAAGTGTCAGGAAATTTCC
AACAGGTGAGTATGAATCTCATGCAGTCACCATGGCAACAAGAGCAGGCA
GGTCTGATGTAGTGTCCTCATCTCTCCCATTCTCTTCTGCTCCTACACTC
ATACCACCTGATACAATCCTCACAGCATCTAGATTTATTCTCCGATGGTG
TCTTAGTCAGGGTTTCTATTGCTGCAGTGAGACACCATGACCAAGAAGCA
AGTTGGGGAGGAAAGGGTTTATTCAGCTCACATTTCCACATTGCTGTTCA
TCACCAAAGGAAATCAGGACAGGAACTCACTCAGGGCAGGTACTTGGAGG
TAGAAGCTGATGCAGAGGCCATGGAGGGTGCTGCTTACTGGATTGCTGCC
CCTGGCTTGCTCTGCTTGCTTTCCTATCAAACCCCATTCTAACCAGCCTA
GGGTGGGACCACCCACCATGTGGCTCTTTCCATACCCCCTTTGACCACTA
ATTTGATATAATGCCTTGAATCTCTTGGAGGCCTTTTTTTCCCTTTGAGA
AATTTTTCTCCTGGGATTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_d01.b1 MSMg01no438_d01.b1 CHROMAT_FILE:
MSMg01no438_d01.b1 PHD_FILE: MSMg01no438_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:52 2005
         (396 letters)



>mm_chr9_40297753_40298548
          Length = 796

 Score =  741 bits (383), Expect = 0.0
 Identities = 383/383 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaactgagatgaattcctgcaagcgatgggctgtgagttggagggaagagacg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaactgagatgaattcctgcaagcgatgggctgtgagttggagggaagagacg 264

                                                                       
Query: 65  aagggtgtatttgagaggatgttgttactgttgcagggtgttttattctcagtactggtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggtgtatttgagaggatgttgttactgttgcagggtgttttattctcagtactggtg 324

                                                                       
Query: 125 cccaggatttccccacactaggaaagtactctaccactggattataccttcaatctgaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccaggatttccccacactaggaaagtactctaccactggattataccttcaatctgaat 384

                                                                       
Query: 185 aaaggacatttgacatcatcactgctaaaaacacacaaaacagggcatagtggagcacgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaggacatttgacatcatcactgctaaaaacacacaaaacagggcatagtggagcacgc 444

                                                                       
Query: 245 cttcaatctctgcacttggggagcagaagcaggtagatctctatgagttccaggatacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttcaatctctgcacttggggagcagaagcaggtagatctctatgagttccaggatacat 504

                                                                       
Query: 305 agtgaatctctgtctctaaagatagatagatagatagatagatagatagatagatagata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtgaatctctgtctctaaagatagatagatagatagatagatagatagatagatagata 564

                                  
Query: 365 gatagatagatagatagatagat 387
           |||||||||||||||||||||||
Sbjct: 565 gatagatagatagatagatagat 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_d01.g1 MSMg01no438_d01.g1 CHROMAT_FILE:
MSMg01no438_d01.g1 PHD_FILE: MSMg01no438_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:52 2005
         (468 letters)



>mm_chr9_40430228_40431095
          Length = 868

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgactgagaatatatatatatatatacatatatatataggatatgctttagacccaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atgactgagaatatatatatatatatacatatatatataggatatgctttagacccaagc 511

                                                                       
Query: 61  tccttatacgccccgctttgactttccagcaagttgtttgctcagataatcactgcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tccttatacgccccgctttgactttccagcaagttgtttgctcagataatcactgcactt 451

                                                                       
Query: 121 gcaaagatgtaagaatcaaccattaaattaactgcttttcattccaagtgtcaggaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcaaagatgtaagaatcaaccattaaattaactgcttttcattccaagtgtcaggaaatt 391

                                                                       
Query: 181 tccaacaggtgagtatgaatctcatgcagtcaccatggcaacaagagcaggcaggtctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tccaacaggtgagtatgaatctcatgcagtcaccatggcaacaagagcaggcaggtctga 331

                                                                       
Query: 241 tgtagtgtcctcatctctcccattctcttctgctcctacactcataccacctgatacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtagtgtcctcatctctcccattctcttctgctcctacactcataccacctgatacaat 271

                                                                       
Query: 301 cctcacagcatctagatttattctccgatggtgtcttagtcagggtttctattgctgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cctcacagcatctagatttattctccgatggtgtcttagtcagggtttctattgctgcag 211

                                                                       
Query: 361 tgagacaccatgaccaagaagcaagttggggaggaaagggtttattcagctcacatttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tgagacaccatgaccaagaagcaagttggggaggaaagggtttattcagctcacatttcc 151

                                                           
Query: 421 acattgctgttcatcaccaaaggaaatcaggacaggaactcactcagg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 acattgctgttcatcaccaaaggaaatcaggacaggaactcactcagg 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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