BAC Information

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BAC

Clone NameMSMg01-438F02
Chromosome9 (Build37)
Map Location 110,978,339 - 110,978,681
singlet/doubletsinglet
Overlap geneLOC100039275
Upstream geneMtap4, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2
Downstream geneLrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438F02.T7 (MSMg01no438_f02.b1)MSMg01-438F02.TJ (MSMg01no438_f02.g1)
ACCAG528941AG528942
length748804
length of high quality
(start - end)		350 (45 - 394)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no438_f02.b1 PHD_FILE: MSMg01no438_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:03 2005CHROMAT_FILE: MSMg01no438_f02.g1 PHD_FILE: MSMg01no438_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCCCATTCCCGGCTCAAGGACTTCCTAGGGCATTGGTGAAGGC
CAGGAAGGAAAGTTCTACTTTTGCTTAGGTATTTCACAAGTCATTGCTTG
GAGGCACCTATAACAAAACAATACTGAAAGGAAGCACACAGATCCATTCG
CAAGGACAAAACTGGAGCATACGTGCTATGGAATGCCACAGTTCCAGGAG
ACTAAGTTTCCGTGAAACTCTTTGCCTCAGAACTGCACCAAGGCTTTTGG
CCTATCATGCATGTCACTACTGGAGTGGATGTAGCAGTATTATATTCTAT
AAGCTTCAGCCACCGCATCCTCTAGTCAACAATGTTTTTGAGATGCATAT
TTCTTTTTGTTATTTAAAACACCTTATTTTATGGGCATAGGTGTTGCGCC
TTCATATTTTCTGTGTACTGCGTGCGTGGCTGGTGCTTGCAAAGCGCCAT
AAGAGGGCCGTACATCCGCTGTAAGTGTTGTTACCGATGGCGTGTCCACC
GCGAACTGAATTTGGATCCTCTGCAAGATCATCAAGTGCTCTTATTTTCA
CGACCATCACCCCAGTCCCCCTCCCCATAGATTCTTGAAAATATGGTTTA
CCCACTCCCCTAATTCTACTACCCACCTTGAATCTTATATAAAATATCCC
CCTTTACAAATATGAATCCCTTCCTTGTTGACTATCTTTTTTTTGTTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCACAGCTTCACCAAATCATTTTCA
ACTTTAATCTATCATAGAAGAAAAGACTCCCTTCTGTTTGTATTATCATC
TACTTGTATTTGAAAATATTTGATATCTATTCCTTTAACCATCACATTTC
TCTGACCTCTGCTTTCCAAATCTCTTTGCAATTACTTGACTGCTGTTGTC
CAACTTGTGAGACGTGTACTTAGTTCATTAATTCCCAGCCTGTTTATCGT
TTATAGAAATTTTCTGAACTCTCTCTATGAATTACAAAAGTTGTTCCCAT
AATAAATTTTAAAGATTTATTTTTATTTACTTGCGCGTGCGCGTGTGCGT
GCGTGTGTGCATGTGTGCGCGTGTGCATGCGTGCGTGCGTGCGTGTGTGC
GTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTTCTTATTCATCCTA
TTATTTAATTTTGACCCTATAACTTCCTCATTTTCTTCCTTCTATCCTTT
TTTTCTTTTTCTTTTTTTTTCTATTATTTCTTTTTTTTTTTTCTTTCCCT
ACTTCTATTTATCTTACTTCTCCTATTTTATCCTTTTTCCTCTTCCTTAC
ACGTATTCTCTCTTTTCCTCTTTTCCTCTTTCTTTACATCCTTTTACTTT
TACCCTCCTTTTTCCTACTTTCTCTCTTTTTTCTTGTTTTTCTTCTTCTA
TCCTTTCTTTTCTTGTCTTTCATTTTTTATTTTTTCTCATTCTATCTTCT
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_f02.g1 MSMg01no438_f02.g1 CHROMAT_FILE:
MSMg01no438_f02.g1 PHD_FILE: MSMg01no438_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:03 2005
         (343 letters)



>mm_chr9_110978212_110978950
          Length = 739

 Score =  590 bits (305), Expect = e-173
 Identities = 334/347 (96%), Gaps = 8/347 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacagcttcaccaaatcattttcaactttaatctatcatagaagaaaagactcccttc 60
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 470 ttcacagcttcaccaaatcattttcaacttta----atcatagaagaaaagactcccttc 415

                                                                       
Query: 61  tgtttgtattatcatctacttgtatttgaaaatatttgatatctattcctttaaccatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 414 tgtttgtattatcatctacttgtatttgaaaatatttgatatctattccttgaaccatca 355

                                                                       
Query: 121 catttctctgacctctgctttccaaatctctttgcaattacttgactgctgttgtccaac 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cacttctctgacctctgctttccaaatctctttgcaattacttgactgctgttgtccaac 295

                                                                       
Query: 181 ttgtgagacgtgtacttagttcattaattcccagcctgtttatcgtttatagaaattttc 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgtgagacatgtacttagttcattaattcccagcctgtttatcgtttatagaaattttc 235

                                                                       
Query: 241 tgaactctctctatgaattacaaaagttgttcccataataaattttaaagatttattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tgaactctctctatgaattacaaaagttgttcccataataaattttaaagatttattttt 175

                                                          
Query: 301 atttacttgcgcgtgcg--cgtg--tgcgtgcgtgtgtgcatgtgtg 343
           |||||||||||||||||  ||||  |||||||||| |||| ||||||
Sbjct: 174 atttacttgcgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtg 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 739
Length adjustment: 9
Effective length of query: 334
Effective length of database: 730
Effective search space:   243820
Effective search space used:   243820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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