Query= MSMg01no438_j23.b1 MSMg01no438_j23.b1 CHROMAT_FILE:
MSMg01no438_j23.b1 PHD_FILE: MSMg01no438_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:28 2005
(508 letters)
>mm_chr9_69058786_69059695
Length = 910
Score = 919 bits (475), Expect = 0.0
Identities = 502/513 (97%), Gaps = 8/513 (1%)
Strand = Plus / Minus
Query: 1 ggaattctgtgtaggtc-cacccgtttactt-aaaaatgttgggaatcgccatgctattt 58
||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 710 ggaattccgtgtaggacacacccgtttacttaaaaaatgttgggaatcgccatgctattt 651
Query: 59 agatgagactatgatagagcctcacttggctcgggctgaggcagacctgattcaactttg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agatgagactatgatagagcctcacttggctcgggctgaggcagacctgattcaactttg 591
Query: 119 atgtcagcaggattgcttttagatgcttcgaagcctggtgctgtacggttgagcaccacg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atgtcagcaggattgcttttagatgcttcgaagcctggtgctgtacggttgagcaccacg 531
Query: 179 ggtggctatcatatcacgacgcaaagcttcgagggctctgtccatgtttcagtgcatgct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggtggctatcatatcacgacgcaaagcttcgagggctctgtccatgtttcagtgcatgct 471
Query: 239 aactcccttctagaacattctcttagaactgtgactctttta--aa-gaatgactgccaa 295
||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 470 aactcccttctagaacattctcttagaactgtgactc---taggaaggaatgactgccaa 414
Query: 296 ctcactgaccactcgagtagtttaagccctgggaaaaaactgtggaaatggccccatgtg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctcactgaccactcgagtagtttaagccctgggaaaaaactgtggaaatggccccatgtg 354
Query: 356 ggccattttgttcatgacaaatctaacctaagagaaacacaccaacagactctcaggtaa 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggccattttgttcatgagaaatctaacctaagagaaacacaccaacagactctcaggtaa 294
Query: 416 agtaatttagggcaataaaaacatattcttctaagtgatactgtccccaagtgactccca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agtaatttagggcaataaaaacatattcttctaagtgatactgtccccaagtgactccca 234
Query: 476 taatgaaaacgagaacatcttcccgtctttcaa 508
|||||||||||||||||||||||||||||||||
Sbjct: 233 taatgaaaacgagaacatcttcccgtctttcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 910
Length adjustment: 10
Effective length of query: 498
Effective length of database: 900
Effective search space: 448200
Effective search space used: 448200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_j23.g1 MSMg01no438_j23.g1 CHROMAT_FILE:
MSMg01no438_j23.g1 PHD_FILE: MSMg01no438_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:28 2005
(489 letters)
>mm_chr9_68890174_68891062
Length = 889
Score = 729 bits (377), Expect = 0.0
Identities = 445/489 (91%), Gaps = 33/489 (6%)
Strand = Plus / Plus
Query: 1 caaaggagatattgtcatcactccagtttataaaggaggacactgatgttcaatgccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggagatattgtcatcactccagtttataaaggaggacactgatgttcaatgccacc 260
Query: 61 caagtagcctatgttagaacttgaacttgaatatggaccgtttaggtcttacaccatatt 120
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 261 caagtagcctatgttagaacttggacttgaatatggactatttaggtcttacaccatatt 320
Query: 121 ctctcaaccattctgcctccctccctgtatattacagtcttcccagagattcgagactca 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcaaccattctgcctccctccctggatattacagtcttcccagagattcgagactca 380
Query: 181 ggcacatgatgggtcacacacatacaaatgcgtgcacacacacacacacacacacacaca 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ggcacatgatgggtcacacacatacaaatgtgtgcacacacacacacacacac------- 433
Query: 241 cacacacacttttcttacacacacacttgtaataaaatatcaaatgtatactcatatcat 300
||||||||||||||||||||||||||||| ||||
Sbjct: 434 --------------------------ttgtaataaaatatcaaatgtatactcatgtcat 467
Query: 301 cagaatttagaaggggtcaaatttatgataattaaacaagtaaaaaaggcagcgcttggt 360
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct: 468 cagaatttagaaggggtcaaatttatgataattaaaaaagtaaaaaaggtagtgcttggt 527
Query: 361 gggtttggcacctcaagagaaattgtagaactatatagctagaggatagacctatatatc 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 528 gggtttggcacctcaagagaaattgtagacctatatagctagaggatagacctatatatc 587
Query: 421 tagaggatagacctatatatagctagaggatagaccaatatatagctagaggatagatct 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 588 tagaggatagacctatatatagctagaggatagacctatatatagctagaggatagatct 647
Query: 481 atatatagc 489
|||||||||
Sbjct: 648 atatatagc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
