Query= MSMg01no438_m24.b1 MSMg01no438_m24.b1 CHROMAT_FILE:
MSMg01no438_m24.b1 PHD_FILE: MSMg01no438_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:43 2005
(415 letters)
>mm_chr9_122074839_122075652
Length = 814
Score = 746 bits (386), Expect = 0.0
Identities = 406/416 (97%), Gaps = 7/416 (1%)
Strand = Plus / Plus
Query: 1 catgcaacattatgaaggcctgttttccatggcttgcttgtagaggttcaaggacacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcaacattatgaaggcctgttttccatggcttgcttgtagaggttcaaggacacctt 260
Query: 61 gggttttggtcctcacctaccttctttgaaacacggtcttctctgccatctgtgcaggta 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gggttttggtcctcacctaccttctttgaaacagggtcttctctgccatctgtgcaggta 320
Query: 121 ttgctggccagtgactctggaacctctccagtctccatccaccaactgtggtggtgctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctggccagtgactctggaacctctccagtctccatccaccaactgtggtggtgctgg 380
Query: 181 ctagtgccagataacctgtgctttgcctaccacatctgacttcccatgggtggttagcat 240
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ctagtgccggataacctgtgctttgcctgccacatctgacttcccatgggtggttagcat 440
Query: 241 atgaaagaaagca---tttttcttaacacttggacaggccagcaacttcatgacagtttc 297
||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaagaaagcaggct----cttaacacttggacaggccagcaacttcatgacagtttc 496
Query: 298 tttttcctctatcacacaggcagtcatggccaaccaaaattgatgtaccccaagaccttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttttcctctatcacacaggcagtcatggccaaccaaaattgatgtaccccaagaccttg 556
Query: 358 aagatgatctcactgccacccctctgtcacatgccacagtcccgcagtctcctgct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagatgatctcactgccacccctctgtcacatgccacagtcccgcagtctcctgct 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 814
Length adjustment: 9
Effective length of query: 406
Effective length of database: 805
Effective search space: 326830
Effective search space used: 326830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_m24.g1 MSMg01no438_m24.g1 CHROMAT_FILE:
MSMg01no438_m24.g1 PHD_FILE: MSMg01no438_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:43 2005
(430 letters)
>mm_chr9_122257742_122258577
Length = 836
Score = 683 bits (353), Expect = 0.0
Identities = 414/440 (94%), Gaps = 10/440 (2%)
Strand = Plus / Minus
Query: 1 agtaacaaaactccaaagtctccaactcctgtggcactttcaagaagttgggctggcaaa 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtaacaatactccaaagtctccaactcctgtggcactttcaagaagttgggctggcaag 404
Query: 61 aatgcacccttggaaatcttcatggaccctaggcttgctctagagtgtggctactgagca 120
|||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 403 aatgtacccttggaagtcttcatggaccctaggcttgctctagtgtgtggctactgagca 344
Query: 121 ctgaaaacaaacaaaaagcacaccattaatctaaagctggttctgcgtggaaactgatgg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 343 ctgaaaacaaacaaaaagcacaccattaatctaaagctggttctgtgtggaaactgatgg 284
Query: 181 agctgtgcccagggatatggaatttgatgaccttccctaagtc------cactcgatttg 234
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 283 agctgtgtgcagggatatggaatttgatgaccttccctaagtccggggacactcaatttg 224
Query: 235 gcttcaccttgatgctaattgtc----ttagggttttactgctgtgaacagacaccatga 290
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct: 223 gcttcaccttgatgctaattgtcttagttagggttttactgttgtgaacagagaccatga 164
Query: 291 ccaaggcaactcttgtaaggacagcttataattggggctggcttacaggttcagaggttc 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 163 ccaaggcaactcttgtaaggacaggttataattggggctggcttacaggttcagaggttc 104
Query: 351 aatcccttatcatcaaggtgggaacatggcagtatccaggcaggcatggtgcagaaggag 410
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 103 aatcccttatcatcaaggtgggaacatggcagcatccaggcaggcatggtgcaggaggag 44
Query: 411 ctgagagntctacatcttca 430
||||||| ||| ||||||||
Sbjct: 43 ctgagagttctgcatcttca 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 836
Length adjustment: 9
Effective length of query: 421
Effective length of database: 827
Effective search space: 348167
Effective search space used: 348167
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
