BAC Information

Click to search

BAC

Clone NameMSMg01-438O05
Chromosome9 (Build37)
Map Location 39,599,805 - 39,600,202
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968
Downstream geneOlfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438O05.T7 (MSMg01no438_o05.b1)MSMg01-438O05.TJ (MSMg01no438_o05.g1)
ACCAG529375AG529376
length750764
length of high quality
(start - end)
396 (64 - 459)513 (69 - 581)
definitionCHROMAT_FILE: MSMg01no438_o05.b1 PHD_FILE: MSMg01no438_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:50 2005CHROMAT_FILE: MSMg01no438_o05.g1 PHD_FILE: MSMg01no438_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTACTATTTTCAGACATCCGCGGAATTCTCAAAA
AGTTTCTAATACTGCCTTGCTATAGGAGTTGCTATATCTGGTTTCATATG
CCCACTGTTTTGCTTCTCATCCAAAGTCAACTCCATTGATTCCTAAGAAT
CTACCCCTTCTCAGGTCTCTAGCATATCCTAGAATTCCCTTCCACCCACC
TGCAACCCTCAACCCTGATATTTGCACATTTTCATTCATTCTCCTGGTCC
TCTGGCACTCTCTCCTGTCTTTCCCCCACACCTGATACTATCACCCCCAT
TTCCATCCTATTTTGTTTTCTCCCTTCATCTGGCTCCTATGACTTTTTTA
TTCCCAATTCTGAGATTCAAGTTTCCTTCTAGAGCCTTCCTTCTTGTTTA
GCTTTTTTGGTCTGTGGAGTGTAGCATGAGTATCTGGTACTTCGTAGCTA
ACATCCAATATATGTTAGTATATACCACCCATGCACTTTGAGGTCAAAAT
TATTTCCAACAAGATGATATATTCTAGTTTCGTCCATTTGCCTGCAAAAT
TCATGATGTCTTTTTTATAAATAGTTGAATAGTATATTTCCGTATTAGAA
CCGTGTTTTCTTTATTCTATTTCTATTGAAAGCCACCTGGCTTGGTTTCC
AGTTTCTGGTTATTACAAATTTCCCCCACTCCCTCCAATGTATGTCCCGT
GATTTTGAGATTTTCGATTTTTGGCCATTCTATATTTGGGTACATAAATT

AGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAAAAGGTAAGGAGCTTCATGTTCACATAG
TTCTGTGTCTCATGACACACATGGGTTTGAAATGTAATTCCTTAGAGAAG
ACTACACTGAACATCAAATGGTCAGCCCTGAAAACACAGATGCAAGTAAC
ATTGCACAGAGTAGTCAGGTTGTATATATGCATAGATATTTATATAGATG
AAGATAATATAGCAATGAATGAGAAAAGAAGCCATGAATTCGAGAGAAAG
CAATGAGGAATTTATCTGAGAACTTGGAGGGAAGAAAGGAAGGGGGAAAA
GATACAATTATATTATAGTGTCAGGAAATAAAAGAATCAAAAGGAAAGAT
AATGACCATCCATGCATACTTTGTCTCCCAGAATTCATATATTGAAAATT
TATTCATAAATAGAAACTTGTTGAGATGTGGGAACTTTAAATGACAATAG
TAATAGCTTCATCAATTATTATAACCATGCAAGTGAGTTGACTATCTGTT
CTTGTTGCTTTTCTGTTGCTGTGATAAAATGCTATTTCAGCTTATGTTTT
AGGGCAGCAACTGAATCAGGAACTGAAGAATAACATTGTAAGGATATGTT
TTATCCGGCTGTTAACTGAGTGTTCATCTAGCCTTCCTATGTAACTTCAG
GTCAACGCCCAGAAAAGATTCCCTCCTAGGTGGGCTTTGCTTTCCACCCT
TTGCTAACAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_o05.g1 MSMg01no438_o05.g1 CHROMAT_FILE:
MSMg01no438_o05.g1 PHD_FILE: MSMg01no438_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:50 2005
         (513 letters)



>mm_chr9_39599290_39600202
          Length = 913

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Minus

                                                                       
Query: 116 acacagatgcaagtaacattgcacagagtagtcaggttgtatatatgcatagatatttat 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 acacagatgcaagtaacattgcacagagtagtcaggttgtatatatgcatagatatttat 854

                                                                       
Query: 176 atagatgaagataatatagcaatgaatgagaaaagaagccatgaattcgagagaaagcaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 atagatgaagataatatagcaatgaatgagaaaagaagccatgaattcgagagaaagcaa 794

                                                                       
Query: 236 tgaggaatttatctgagaacttggagggaagaaaggaagggggaaaagatacaattatat 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgaggaatttatctgagaacttggagggaagaaaggaagggggaaaagatacaattatat 734

                                                                       
Query: 296 tatagtgtcaggaaataaaagaatcaaaaggaaagataatgaccatccatgcatactttg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tatagtgtcaggaaataaaagaatcaaaaggaaagataatgaccatccatgcatactttg 674

                                                                       
Query: 356 tctcccagaattcatatattgaaaatttattcataaatagaaacttgttgagatgtggga 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctcccagaattcatatattgaaaatttattcataaatagaaacttgttgagatgtggga 614

                                                                       
Query: 416 actttaaatgacaatagtaatagcttcatcaattattataaccatgcaagtgagttgact 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 actttaaatgacaatagtaatagcttcatcaattattataaccatgcaagtgagttgact 554

                                                 
Query: 476 atctgttcttgttgcttttctgttgctgtgataaaatg 513
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atctgttcttgttgcttttctgttgctgtgataaaatg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)