BAC Information

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BAC

Clone NameMSMg01-439A04
Chromosome9 (Build37)
Map Location 30,244,629 - 30,244,970
singlet/doubletsinglet
Overlap geneSnx19
Upstream geneHnt
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A04.T7 (MSMg01no439_a04.b1)MSMg01-439A04.TJ (MSMg01no439_a04.g1)
ACCAG529469AG529470
length725756
length of high quality
(start - end)
543 (45 - 587)342 (76 - 417)
definitionCHROMAT_FILE: MSMg01no439_a04.b1 PHD_FILE: MSMg01no439_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:00 2005CHROMAT_FILE: MSMg01no439_a04.g1 PHD_FILE: MSMg01no439_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATATTTCTCAGATATTAGCCCCATATCAGATTTAGTATTGGTA
AAGATCTTTTCCCAATCTGTTGGCTGCCATTTTGTGTTATTGACAGTGTC
TTTTGCCTTACAGAACCTTTACAATTTTATGAGGTCCCATTTGTCAATTC
TTGATGTTACAGCACAAGCCATTGCTGTTCTTTTCAAGAATATTTCCCCT
GTGCCCATATCTTCAAGGCTCTTCCCCACTTTCCACTCTAAAAGTTTCAG
TGTCTATGGTTTTATGTGGAGTTCTTTGATCCACTTAGACTTGAGCTTTG
TACAAGGAGATAAAAATGGATCAATTCGTGTTCTTCTACATGCTAACCGC
CAGTTGAGCCAGTAACATTTGTTGAAGATGCTGTCTTTTTTCCATTGGAT
GGTTTTAGCTCCTTTGTCAATGATCAAGTTACCATAGGTGTGTGGGTTCA
TTTCTGGGTCTTCAATTCTATTCCATTGATCTGCCTGTCTGTCATTGTAC
CAGTACCATGCAGTTTTTATCACAATTGCTCTATAGTAAAGCCTGAGGTC
AGGCACGGTGATTCCACCATAGGTTCCTTTATTGTGGAGAATACTTTTGC
CATTCCAGGATTTTTGTTATTCAAACGAATTTGCACACCCCCCTCTTTAC
TTTGTGCCTACATCATCCGCCCCTC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGGTCTGGATTGGCAAGTTGG
CTTCTTAAGGGAGTGGGTTTGAGATAATAGTAGCAGGATGATAAGGGAAA
GCATTTTCTAGATGAGAACAGGTGATCCGTCCATGTACAAAGGTGATTAT
CCCAGAGCAGGCTAGGTTTACTTGCAGCCTGGGTAAGGAGTGGAAGCTTT
CCCGAGGTGGCCATGGGTTAGTGGACTCTGTGCACATGGGACTTTTTCAA
GTGAGAGTTGGGAAACCTTTATGCTACCTTTATTCTGACTTCTGCATCCT
TGGTGATCTTTGTTACTTGCTGTTTCTTCAGGAGTCAGAAGTCCTGTCCA
TGTCTGGGATGGAGTCTTTCATTGAAAAACAGACAAAGTTACTGAGAATC
CAGCCAGCATAAGTCCCGGACAACGATCCCCAGCAAGCCCCCAAAGAATA
TGTGTATAGCGGTTTGCCTGGATCACGCTGCGCTCCCCCCTTATTCTCTA
TTTCACCGTTCCGTTCGGATTGACTATTCCCTTTTGCCTCCTCATTTCCA
CACTCCCCCGTTTTTGCCCCATTGCCGCCTTTTTTCTTTGTCTTATCTCT
GCCTGCGTTTTGTTTTTTCCTCTTGCTTTTCCCTTCTCATCTTTCCCTCC
GTTTGTCCTTTACGCCGCTCGGTGGTCCCTTCTTTTCCATTTCTTGCTCC
CTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a04.g1 MSMg01no439_a04.g1 CHROMAT_FILE:
MSMg01no439_a04.g1 PHD_FILE: MSMg01no439_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:00 2005
         (342 letters)



>mm_chr9_30244429_30245170
          Length = 742

 Score =  569 bits (294), Expect = e-166
 Identities = 330/342 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcaggtctggattggcaagttggcttcttaagggagtgggtttgagataatagtagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgtcaggtctggattggcaagttggcttcttaagggagtgggtttgagataatggtagca 260

                                                                       
Query: 61  ggatgataagggaaagcattttctagatgagaacaggtgatccgtccatgtacaaaggtg 120
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 261 ggatgataagggaaagcattttctagctgagagcaggtgatccgtccatgtacaaaggtg 320

                                                                       
Query: 121 attatcccagagcaggctaggtttacttgcagcctgggtaaggagtggaagctttcccga 180
           ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 321 attatcccagagcaggctaggcttacttgcagcctgggtgaggagcggaagctttcccga 380

                                                                       
Query: 181 ggtggccatgggttagtggactctgtgcacatgggactttttcaagtgagagttgggaaa 240
           |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 381 ggtggccatgggttagtgcactctgtgcacgtgggactttttcaagtgacagttgggaaa 440

                                                                       
Query: 241 cctttatgctacctttattctgacttctgcatccttggtgatctttgttacttgctgttt 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagatgctacctttattctgacttctgcatccttggtgatctttgttacttgctgttt 500

                                                     
Query: 301 cttcaggagtcagaagtcctgtccatgtctgggatggagtct 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcaggagtcagaagtcctgtccatgtctgggatggagtct 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)