ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACGATCCGCGGAAT
TCAGACTCTCTCCCTCAGCTTCTGCTCAGCTACACAGCCCAGCCTGCCTC
AGGATGACACCACCTGCCGTGGGGTAGGTTTTCTCTGTATGGTTTTATAT
ATACCGCTTAAGGCTTTCACTGTAATGAGTAGAAACACCACGCTTATGAC
CGAAACAATGTTTTCACTCACAGACCTCACTGTTTGCTTATGTAAATAGG
TCAGAGCTATTCTTTAATTTCATTATCATATGGGCCACTATTCATTCCTA
ATTCGTAGTATGTATTTTTTTATCATCAACAAGCCTAATTAGTAGTTCTT
CTTGTTTAAAAAGTAGCTATTCCTCCTAAAATCGTGGTGCGCTATAAAAC
CCTCCAAGGCTGACCTCTCATTTCCTGTCTTTCCTTGTCCATCTTCAAGT
GAACCAGAGGATCTGGAAAACTCAGTCAGAAAGACCCGATGTTTCCCATG
CTGTTCTCCCCACCCACACCACCTCGTAAAAGGCAAAGTTTCCAAATCAA
GGTTTCCATGGAACAACCCAAGTCGAGCGGATCTGCTCCTCCAACTCACA
GAGCATCTACAGTTATCACGATCTTGTTTGAACAAAGTCCCGCCTTTTCC
CTATAAAATTACACCTTTTCATATCATTCCCCTATATCTTCCCTTACCCC
ACCAATCCTCTCATTTTTCCTGTTTTTTTTACGCTCCTTTTTCTATCCTT
TT

ATAATTCCAANCCCTGNNNNNNCGCCTGTTTCAAAAATATTTANNNNGAN
NCNNNNNTTTTNNCAAAAAAAATTNNTAANNTGNANNANNNANNANATAN
NGNNANNNAAAAAAAAAAAAGNNANNNNNGTTCNANNAAAANNNNAAAAN
NNNGNNNAAAATTTTANATTANAAGGNAAGGGTAAAGGGAAGAAAAGAAC
TTGGGAATGTTAAGAAAAAAGATAGGAAGGCTGNNNNNAANAANNNNNTT
TTTTTTTATGAATCTAGAATATTTTAAATTGAAGAAAATAAAAAAAAGAA
GAAAAAGGATTTGAAGGAATTTGAGTGATTAAGAAAAGAGAAAATAATAA
AATTAGNNNTTNNNTTTTTTTTNTCCCCCCTCTCCCCTTTCCTTTTTTTT
CCTCCCTTTTCTTTTTTTTTTTTTTTTCCCCCCCTTTTTTTTCCTTTCTT
NTTTTTTTTTTTCTTTTCCCCCCCTCCNCCCCCCCCCCCCCTTTTTTTTC
TCTTTTTCTCTTCTCCCTTTTTCCCCTTTTTTCTCCCCTCCCCTTTTTCT
TTCCCCTTTTCCCCCCCTTTCTNTTTTTTTTTTCTCTTCCNCCCTTTCTT
TTCTTTTTCCCCCCCTTCCCCTTTTTCCTTCTTTTTNCCCCCTCTCCCCT
TTTCCCTTTTCCNCCCTTCTTTTTTTTTTTTCCTCCCTTNTCCTCCTTTT
TCCCCTTTTTTTTTTCTTTTTTCCCCTCNCCCTTTTTCTCTTCCTTTTTT
TTCTCCCTCTTCCTTTTTTTCTTTTTCCCCCCTTTCCTTTCTCCCTTCCT
CTTTTTTCCTCTTTCTTTTTTTCTTTNCCTNTTTCCNCTTTTCTCTTCTT
TTTTTTTTTTTTTTTTATTTTG

Query= MSMg01no439_e12.b1 MSMg01no439_e12.b1 CHROMAT_FILE:
MSMg01no439_e12.b1 PHD_FILE: MSMg01no439_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:21 2005
         (462 letters)



>mm_chr9_116675910_116676768
          Length = 859

 Score =  799 bits (413), Expect = 0.0
 Identities = 450/465 (96%), Gaps = 9/465 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgctcagctacacagcccagcctgcctcaggatgacaccacctgccgtggggtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttctgctcagctacacagcccagcctgcctcaggatgacaccacctgccgtggggtagg 600

                                                                       
Query: 61  ttttctctgtatggttttatatataccgctt--aaggctttcactgtaatgagtagaaac 118
           |||||||||||||||||||| ||||||||||  ||  |||||||||||||||||||||||
Sbjct: 599 ttttctctgtatggttttatgtataccgcttacaa--ctttcactgtaatgagtagaaac 542

                                                                       
Query: 119 accacgcttatgaccgaaacaatgttttcactcacagacctcactgtttgcttatgtaaa 178
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accacgcttatgaccggaacaatgttttcactcacagacctcactgtttgcttatgtaaa 482

                                                                       
Query: 179 taggtcagagctattctttaatttcattatcatatgggccactattcattcctaattcgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 taggtcagagctattctttaatttcattatcatatgggccactattcattcttaattcgt 422

                                                                       
Query: 239 agtatg-tatttttttatcatcaacaagcctaattagtagttcttcttgtttaaaaagta 297
           ||||||  |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtatgaca---ttttatcatcaacaagcctaattagtagttcttcttgtttaaaaagta 365

                                                                       
Query: 298 gctattcctcctaaaatcgtggtgcgctataaaaccctccaaggctgacctctcatttcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctattcctcctaaaatcgtggtgcgctataaaaccctccaaggctgacctctcatttcc 305

                                                                       
Query: 358 tgtctttccttgtccatcttcaagtgaaccagaggatctggaaaactcagtcagaaagac 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 304 tgtctttccttgtccatcttcaagtgaaccagaggatctggaaaactcagtcaggaagac 245

                                                        
Query: 418 ccgatgtttcccatgctgttctccccacccacaccacctcgtaaa 462
           | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 c-gatgtttcccatgctgttctccccacccacaccacctcataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 859
Length adjustment: 10
Effective length of query: 452
Effective length of database: 849
Effective search space:   383748
Effective search space used:   383748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)