BAC Information

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BAC

Clone NameMSMg01-439F16
Chromosome9 (Build37)
Map Location 112,130,554 - 112,130,795
singlet/doubletsinglet
Overlap geneLOC100039341
Upstream geneMlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21
Downstream geneLOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F16.T7 (MSMg01no439_f16.b1)MSMg01-439F16.TJ (MSMg01no439_f16.g1)
ACCAG529727AG529728
length755792
length of high quality
(start - end)
425 (68 - 492)242 (71 - 312)
definitionCHROMAT_FILE: MSMg01no439_f16.b1 PHD_FILE: MSMg01no439_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:27 2005CHROMAT_FILE: MSMg01no439_f16.g1 PHD_FILE: MSMg01no439_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TTTTTGTTACCAGAATAGAAATTCACAACACACAACTCCAAATGGATCAA
GGTCCTTGATATGAAACCTGGTCCCTTGAAACTGGTAGAGGAGAAATTAG
GGACCATGCTTCAATAGATAGGATTTCTGAATAAGACTCTGGTAGCATAA
AACAGGATCATGTGTCATGTAATACCAGTGTCTCTCATGAAACAAAAATC
TCTGTACAGCAAAAGAAAGTGTGACGCAAGTAAATAGTAGTCCCACAGAG
TGAGAGAAGGTTACTGTGGCTACTCATCCAGCAGGGAGTTAGTGTCTAGA
ATATGCCAAAGATTGCAACAGATTAAGAACATAAGCAACCAATTAAAATG
GCCTATAGAGCTGAACAGAAAACTCTAAAGAGATAAAAACAGCTTTTACA
AAACCACTTTTTAAAAATGCTCAACATCCTTATCCATAAGAGAAATGCTT
ATGAAAACTATTTCCACCTTAGCCCAGTCTGGACTGTCTGCCTTAAGAAG
TACTAATTATTACCAATGCTGTCGTGGAGTTGCTCCTAGGTGAACTTGGA
CCATTGTCTGCACACTGTGGAACTTGTCCAATTCACTTTGTTAACCCCTT
CCGCCGCTTTCTCATTTCGACGCATTTATATTTCCCCCCCGCGCCACCCT
GTTTTTTTCCCCCCCGTGTTTTTATTTCTTTAGTGCACCGCTTCCCTTTA
TCTAN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTACTGAAATTACACTTCACGACAAACAAG
ACACAAGCCAAGAACGCCACTAATTTTGTTTTCCCACAAATAAGTGCTAT
AATGTCCTGTGAGAATTTTGTCTGTGCTTTTAGAGACATGGGAATCATTT
GACAGTATTTAATTTTCCAGTTGTGCTCCTTATATACAAATAATTTTATT
AAAGGATCAAGACTAACCTTTGGGTGCCAATGAGTTAACCTGTTCCTTCT
TTAAATCCAGTTGGTTATATCTAGAATTTTCTAGAGTTTTCTAAGTTGCT
GTATTTTTGAGGAACCCCCTCTGAAAGTACGTTTGAATTGCTGAGTGCGT
GAACTGCTTCCCGCACCCCTCATTGGACCATTGAAAAAAATACTTTATTT
TACCCGGCAGAACAAACAACCCTTTTTACATTCATGTGCCCTTTGGGAAC
CCTAAAAAAATTGGGGATTTTTTTCCCTCGTTATTGTTGTCTTCCACCCC
CTGGCCTTATATAACCCTCACCCCTTTTTCTTTTTTTCTTTTTACCTTTC
CTCTCTCCCTTTTTTCTCCTCTTTTTCCCCCACCCCCCTTCCCCTCCTTT
TTTTTTTTCTTTATGGCCAACATACTTTACCCTCTATTTATACTCCTCAT
AATCTCCCTCCTCCTTTTTTCTTCTCTGTTTTTATCACCCCCCCCCCCCT
TTTTCTCTCGCTTCTTCTATATTTACACCCACTTTTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f16.g1 MSMg01no439_f16.g1 CHROMAT_FILE:
MSMg01no439_f16.g1 PHD_FILE: MSMg01no439_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:27 2005
         (242 letters)



>mm_chr9_112130354_112130996
          Length = 643

 Score =  410 bits (212), Expect = e-119
 Identities = 234/246 (95%), Gaps = 9/246 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactgaaattacacttcacgacaaacaagacacaagccaagaacgccactaattttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 201 ctactgaaattacacttcacgacaaacaagacacaagccaagaacgccactcactgtgtt 260

                                                                       
Query: 61  ttcccacaaataagtgctataatgtcctgtgagaattttgtctgtgcttttagagacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccacaaataagtgctataatgtcctgtgagaattttgtctgtgcttttagagacatg 320

                                                                       
Query: 121 ggaatcatttgacagtatttaattttccagttgtgctccttatatacaaataatttta-- 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |  
Sbjct: 321 ggaatcatttgacagtatttaattttccagttgtgctccttatatacaaataa----aaa 376

                                                                       
Query: 179 ---ttaaaggatcaagactaacctttgggtgccaatgagttaacctgttccttctttaaa 235
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaattaaaggatcaagactaacctttgggtgccaatgagttaacctgttccttctttaaa 436

                 
Query: 236 tccagt 241
           ||||||
Sbjct: 437 tccagt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)