Query= MSMg01no440_d07.b1 MSMg01no440_d07.b1 CHROMAT_FILE:
MSMg01no440_d07.b1 PHD_FILE: MSMg01no440_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:34 2005
(579 letters)
>mm_chr9_67382427_67383405
Length = 979
Score = 990 bits (512), Expect = 0.0
Identities = 529/536 (98%), Gaps = 3/536 (0%)
Strand = Plus / Minus
Query: 47 caccatcttgaagccaaccatttctattacccaggcctgtggtttatatttgcaatgcct 106
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 979 caccatcttgaagccaaccatttctattacccaggcccgtggtttatatttgcaatgcct 920
Query: 107 tcctactttctgggaaagtgatgcatttttaatttttatttattattattttttcagtca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tcctactttctgggaaagtgatgcatttttaatttttatttattattattttttcagtca 860
Query: 167 aggtggctttgaacttatcatagaaatctgcctccttagtgctgggattaagagagtgtg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aggtggctttgaacttatcatagaaatctgcctccttagtgctgggattaagagagtgtg 800
Query: 227 ctaccaaccac---tttttttttttttaattatgaaagttcaacagagaaatagcttagg 283
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctaccaaccacttttttttttttttttaattatgaaagttcaacagagaaatagcttagg 740
Query: 284 tctgactcgaagctaccactctgccatgaattctgtccccagtacagtcacattactttc 343
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctgactcgaagttaccactctgccatgaattctgtccccagtacagtcacattactttc 680
Query: 344 agcatcacagttataaattctttcaagaccacagtttgggtgagaagaaatgattggtgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agcatcacagttataaattctttcaagaccacagtttgggtgagaagaaatgattggtgg 620
Query: 404 ttgttggttgttttctactgataaataggaacacagaagagccttttgctcagtgcggct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgttggttgttttctactgataaataggaacacagaagagccttttgctcagtgcggct 560
Query: 464 gcacagaaaccgaggcgctgaagaagagacatcactgttgctcccacatccgctcagagt 523
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcacagaaaccgaggggctgaagaagagacatcactgttgctcccacatccgctcagagt 500
Query: 524 ccaatgactagtctcttctctccacactagggaatggggtgaaggtctgacttgcc 579
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaatgagtagtctcttctctccacactagggaatggggtgaaggtctgacttgcc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_d07.g1 MSMg01no440_d07.g1 CHROMAT_FILE:
MSMg01no440_d07.g1 PHD_FILE: MSMg01no440_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:34 2005
(583 letters)
>mm_chr9_67209476_67210458
Length = 983
Score = 938 bits (485), Expect = 0.0
Identities = 551/583 (94%), Gaps = 16/583 (2%)
Strand = Plus / Plus
Query: 1 ccaactttgactgatattcttgagttctcaaaactagcccaatagcaagggattcccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaactttgactgatattcttgagttctcaaaactagcccaatagcaagggattcccaag 260
Query: 61 gcaggcctgagcggtactgaatcagatgaattagaaagggctcagcaagacgaggttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggcctgagcggtactgaatcagatgaattagaaagggctcagcaagacgaggttaca 320
Query: 121 aaggtaggtcacagataacgggcccatttcacgcacttaagagggtatccgggccagtca 180
|||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 321 aaggtaggtcacagatgacgggcccatttcacgcatttaagagggtatcagggccagtca 380
Query: 181 gcctgaagctgctgtagaggcaaagggtttgtttctacagcacaaagtggtgcgtggtgg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgaagctgctgtagaggcaaacggtttgtttctacagcacaaagtggtgcgtggtgg 440
Query: 241 ttaattcttactggcaacttgaataagaatcaccttggaaaccagcctctaggcaggtct 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattcttgctggcaacttgaataagaatcaccttggaaaccagcctctaggcaggtct 500
Query: 301 gtgagggaagaccaacttctagcttgggttaactgaggtgggaagacccactctaaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagggaagaccaacttctagcttgggttaactgaggtgggaagacccactctaaatgt 560
Query: 361 gagtggtatcattccacaggttaggatcttagactatgttaaagagaaagctgagtgcca 420
| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 561 gggtggtcccattccacaggt----------------gttaaagagaaagctgagtgcca 604
Query: 421 gaattcacccctccatgcatctgaatgtgatgcacagcatgatcagttgactcacattcg 480
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 605 gaattcacccctctatgcatctgaatgtgatgcacagcatgatcagttgcctcacatttg 664
Query: 481 ccaatctcctcttcatcacaatggaccatcctttctatgtgtgaaccaaaatatataaat 540
|||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 665 ccaacctcctcttcatcacaatggaccatcctttcaacatgtgaaccaaaatatataaat 724
Query: 541 gtatacttcttctgataagttgcttttatcgggtattttgtaa 583
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 725 gtatacttcttctgataagttgcttttattgggtattttgtaa 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
