Query= MSMg01no440_o24.b1 MSMg01no440_o24.b1 CHROMAT_FILE:
MSMg01no440_o24.b1 PHD_FILE: MSMg01no440_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:33 2005
(433 letters)
>mm_chr9_87312785_87313611
Length = 827
Score = 721 bits (373), Expect = 0.0
Identities = 410/431 (95%), Gaps = 18/431 (4%)
Strand = Plus / Minus
Query: 5 gaattctaa--acacacacacacactcgctccacaagggaaaatgtaggcaaatgtcacc 62
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattctaaacacacacacacacactcgctccacaagggaaaatgtaggcaaatgtcacc 748
Query: 63 agcccaagactgggctctccacaaaaggaaactctggaacaagagaatttaaagtctcgg 122
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 747 agcccaagactgagctctccacaaaaggaaactctggaacaagagaatttagagtctcgg 688
Query: 123 ccaacgtttctgaaccctcacgactcctcccttgctggcaaaaaaaaaaacaaaacaaaa 182
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 687 ccaacgtttctgaaccctcacgacccctcccttgctggcaaaaaaaaa--------aaaa 636
Query: 183 caaaacaaaaatcttccaacttaacaaacaacttttggaggtataatgggggtgaaagca 242
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 -aaaa-aaaaatcttccaacttaacaaacaacttttggaggtataatgggggtgaaag-- 580
Query: 243 gcaacagcatcgattggaggatgagacacagttctgtgaaaaaagttcaaatagtgcaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ----cagcatcgattggaggatgagacacagttctgtgaaaaaagttcaaatagtgcaaa 524
Query: 303 attctccagggaaaacattggaaatgtgcacagagcaaccattaaatggctctcctcctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 attctccagggaaaacattggaaatgtgcacagagcaaccattaaatggctctcctcctc 464
Query: 363 ccagccagtcctcctccagggaccacggtctgcaggaccgccactgtcctctcggtcggg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccagccagtcctcctccagggaccacggtctgcaggaccgccactgtcctctcggtcggg 404
Query: 423 gcttcttaatt 433
|||||||||||
Sbjct: 403 gcttcttaatt 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 827
Length adjustment: 9
Effective length of query: 424
Effective length of database: 818
Effective search space: 346832
Effective search space used: 346832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_o24.g1 MSMg01no440_o24.g1 CHROMAT_FILE:
MSMg01no440_o24.g1 PHD_FILE: MSMg01no440_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:33 2005
(423 letters)
>mm_chr9_87089646_87090468
Length = 823
Score = 803 bits (415), Expect = 0.0
Identities = 421/423 (99%)
Strand = Plus / Plus
Query: 1 taagaggacaaggatctgcagggtggagagctcctcagaggtgggtgtcaggattcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaggacaaggatctgcagggtggagagctcctcagaggtgggtgtcaggattcctcc 260
Query: 61 aggggatgcactgactggaatcttaaagaacacggctgacaatccactgcacattagtgc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcggatgcactgactggaatcttaaagaacacggctgacaatccactgcacattagtgc 320
Query: 121 tagaccttccagacagcagcctcagcttattacatttatacctgcttactgtctgagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaccttccagacagcagcctcagcttattacatttatacctgcttactgtctgagcca 380
Query: 181 caaaattaaggtccacacgagactttcctttgtcctcagaatttatagaacctcgatttt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 caaaattaaggtccacacgagactttcctttgtcctcagaatttctagaacctcgatttt 440
Query: 241 tctactactgatgggttccgagctagcatttctttctgtatgctggctagttaacaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctactactgatgggttccgagctagcatttctttctgtatgctggctagttaacaactg 500
Query: 301 taaaattatttcattttattggcataaatttcatctttataatgggaaaaaacagtgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaattatttcattttattggcataaatttcatctttataatgggaaaaaacagtgctc 560
Query: 361 acaccttgggtatgattagcatcaagcaaactaatccatgttcttagcacagttcattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaccttgggtatgattagcatcaagcaaactaatccatgttcttagcacagttcattca 620
Query: 421 gac 423
|||
Sbjct: 621 gac 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
