BAC Information

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BAC

Clone NameMSMg01-441G23
Chromosome9 (Build37)
Map Location 101,103,967 - 101,104,399
singlet/doubletsinglet
Overlap gene3222402P14Rik
Upstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1
Downstream geneLOC100041065, EG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G23.T7 (MSMg01no441_g23.b1)MSMg01-441G23.TJ (MSMg01no441_g23.g1)
ACCAG531317AG531318
length809808
length of high quality
(start - end)
458 (52 - 509)422 (72 - 493)
definitionCHROMAT_FILE: MSMg01no441_g23.b1 PHD_FILE: MSMg01no441_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:12 2005CHROMAT_FILE: MSMg01no441_g23.g1 PHD_FILE: MSMg01no441_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTTCCAACTTTTATCATGAATGGGTGTTGGATCTTGTC
AAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCAT
CCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGAAAGATCTCCC
ATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAA
AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC
TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA
ACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA
TCACCATGCCTGACCTAAAGCTTTACTACAGGGCAATTGTGATAAAAACT
GCATGGTACTGGTATAGAGACAGACCAGTAGACCATTGGGATAGAATTGG
AAGACCCAGAAATGAACCCCCCACCTATGGGCACTTGATCTTCGACAAGG
GAGCTAAAACCTCCCTCGGAAGAAAAACAGCATTTTTTAAAATTGGGGTT
GGACAAACTGGTGTTATCTTGTTAAAAAAGGGAAATCTATCCTAATTTTT
TCCTTTGCCTAAGGGCAAAACTAAAGGGTTCAGGGAATTTTTTTTAAACC
CAAAACCTGGATTTTTTTTAGAAAAAGGTGGGAAAACCTTTAAAAATGTT
TATCGGAAN
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCTGTAAGGCTTAGTCTGAAACTCAAT
TGTTTTGAAAACAATTTTCTAAATCTTATAATTATCTGGCCTTCTCTCTT
ATAAAATGAAGGCAGTGATATATAACCTTAATTATCTTTGGAAAGAGTCA
GCTCTGGGCAATGTTTTAAGAAGGGTTGCTTAAAAAAATTGACGATTGAG
TGGAAAACTAAATCACTTATTTTGATTTATGTATTAATGCAGTATGTTAT
GCTAGGGGCGTAGCTGTGCCTTAATGTTAGAGTGCTTACCTAGAATGCAC
AAAGTCTTGAACTGGAAAATTCCCAGGACTGGAAAAAGAAAACACACACA
CACACACACACACACACACACACACACACACACACACACACTAAGACCAA
CCAACCAGCCCCCTACATCAAAATAGTGTTTATTGCTCATCAACAATGTG
TTATACCAAGTAAGTCAAGCTCTTCCCAGGACTGGGAAAAGAAAAACACA
CACACACACACACACACACACACTCACACACACTCACACACACACACATA
CACACACACTCCCTTAGACCAACCAACCAGCGCCCCTAATTAAAAAAGGG
TTTTTTTTGCCCCCCACAATGGGGTGTATACACAAAAAAAAAGACCCTTT
TTCTGTGTAATGGGGCTTTTTTAACATCTTCCCACCCCCTCTCTAAGGGG
GTTATGGAACACAAAAATATTCCCTCACAACCTTTTCTTCTTGGTAAATT
GTGCGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g23.g1 MSMg01no441_g23.g1 CHROMAT_FILE:
MSMg01no441_g23.g1 PHD_FILE: MSMg01no441_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:13 2005
         (422 letters)



>mm_chr9_101103767_101104589
          Length = 823

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/433 (96%), Gaps = 11/433 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtaaggcttagtctgaaactcaattgttttgaaaacaattttctaaatcttataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtaaggcttagtctgaaactcaattgttttgaaaacaattttctaaatcttataa 260

                                                                       
Query: 61  ttatctggccttctctcttataaaatgaaggcagtgatatataaccttaattatctttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatctggccttctctcttataaaatgaaggcagtgatatataaccttaattatctttgg 320

                                                                       
Query: 121 aaagagtcagctctgggcaatgttttaagaagggttgctt-aaaaaaattgacgattgag 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct: 321 aaagagtcagctctgggcaatgttttaagaagggttgcttaaaaaaaattgacaattaag 380

                                                                       
Query: 180 tggaaaactaaatcacttattttgatttatgtattaatgcagtatgttatgctaggggcg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaaactaaatcacttattttgatttatgtattaatgcagtatgttatgctaggggcg 440

                                                                       
Query: 240 tagctgtgccttaatgttagagtgcttacctagaatgcacaaagtcttgaactggaaaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctgtgccttaatgttagagtgcttacctagaatgcacaaagtcttgaactggaaaat 500

                                                                       
Query: 300 tcccaggactggaaaaagaaaacacacacacacacacacacacacacacacacacacaca 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcaggactggaaaaagaaaacacacacacacacacacacacacacacacacacacaca 560

                                                                       
Query: 360 cacacacacac----------taagaccaaccaaccagccccctacatcaaaatagtgtt 409
           |||||||||||          |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacacacacacacaaacactaagaccaaccaaccagccccctacatcaaaatagtgtt 620

                        
Query: 410 tattgctcatcaa 422
           |||||||||||||
Sbjct: 621 tattgctcatcaa 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space:   336182
Effective search space used:   336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)