BAC Information

Click to search

BAC

Clone NameMSMg01-441H12
Chromosome9 (Build37)
Map Location 65,497,501 - 65,657,272
singlet/doubletdoublet
Overlap geneRbpms2, Oaz2, Zfp609, LOC100041180
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121
Downstream geneTrip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441H12.T7 (MSMg01no441_h12.b1)MSMg01-441H12.TJ (MSMg01no441_h12.g1)
ACCAG531343AG531344
length777814
length of high quality
(start - end)
439 (73 - 511)169 (74 - 242)
definitionCHROMAT_FILE: MSMg01no441_h12.b1 PHD_FILE: MSMg01no441_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:15 2005CHROMAT_FILE: MSMg01no441_h12.g1 PHD_FILE: MSMg01no441_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,497,501 - 65,497,935)(65,657,104 - 65,657,272)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGATATTCGATGTAGCCTTTTTTTTTTTTTTTTTCTGAGGA
AACTGGATAAGGGACTTGCTCTCAAATGGCATGTCAGTAGAGCCCTGGGA
ATGCCCTGGGCACTGCTGTACCATGTGATTCAGAACACTTAAGGCCTCAG
GAACTCAGCCTCAATGTGAGGGTTGCCTTTGGAGGATTACAGAATGCTTC
AGGGGATCACTGAGGAAAGATGAGGCTGATGGGGGAGACAGTGCTGGGTT
AGCATAGCAACAGCTTCTGACTCCCTGAAATGGCCACCTCTCTCCACAGG
GCTATGAAGGGTCCCTGATCAAGCTCACCTCAAGACAGGTAATTTCTCTT
CTAGGTTTTTCCTCTCAGCTCAGGCTAACTGCTGGCATGGAACTGAAACG
TTTGTCCTACTGCTTGAAGGCATCTGAAGGTGGAGACCCACTCCTTGCTG
TCTTGCTTCTGCCCTGACAGAAGGACAGCCTCCACAGCTCTCTCCTTTTC
TAGCCAGTTGGGCCTTGTCAGCCTCCTCTCTTTTCTGTCTGGCTCTGGGA
TTCTGGAAACAAACTGCCTGGGCCCCAGGGCATAAAACCCGTAAAAAGAA
AAAGATATTTGGGTTCCTGCCCTCCTCCGAGAAACCATAAAGGGGGAAAC
CCAAACTTTCCCCCCCCCCCGCCGGGTCTTAACAGGGTTCGCGGGGGGGG
CCCCTTTTTTTTTGTTAAAAATATCCC
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACAAGCGCAATTCACTTAATCTTGATCTATTTCCCA
TGTGTTGGAATTACAGGTTTTTAAAGTAGAAAAATGTAGATTTTTCTTTA
GGTTTTGTTGTTGTTGTTTTTATTTTTTGTTTTGTTGGTATATAAACTAA
CAGGNTTTCTCTGTGTAGGCCTGGCTGTCATTGGCCAGGCTGGCTTGAAT
TTTTTTTCCACCGGNCGCCGCTCCCCAAGCGCTACGATCAAAGGGGCGAG
CCACAGCCACCCCACTTCGCGTGGCTTTCGAGACGCCACCCGCGCACACA
CGANGGAGTTTTTTTCCTCCCCCCCCCCCTCTGTCGGGCGGGCAGTAAGA
GTGGCCGAGGTTTTTCCCCCCCCCGAGTTTTTTTTTATCCTTCCCTCTTT
ATTCCGCCCGCTCCCTCATTCCCCTTTCACGTTTGTACCCCCTTTGTCCC
TGTTATTCCCCTCCCTCCCTTTTCCCCCTATCTTTCTCCTTCCCTCGTTG
TCCCTCTTTTCCTCCTTTATCCCCTACCCATCCCTTTTTTCTGCCTCCTT
CCTCCTCTCCCCTTCTCCTCCTTTTTCCCACGGAACAACAACCCTAATAT
TCTTCATTACTTTATTTGCTTTCCTCATCACGCNCCTTTTCTTTTTTTTT
TTCTTTTCCCCTCTCTTCATTCTTCCACGCCCCCCCCCTCCCCCCTTTTC
CTCTCTCCCTCTTTTCTTCCCCCCCCCTCTCCGTCCACTTCTATCTTTTT
TTTTTATTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_h12.b1 MSMg01no441_h12.b1 CHROMAT_FILE:
MSMg01no441_h12.b1 PHD_FILE: MSMg01no441_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:15 2005
         (439 letters)



>mm_chr9_65497297_65498135
          Length = 839

 Score =  803 bits (415), Expect = 0.0
 Identities = 430/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tttttttttttttttttctgaggaaactggataagggacttgctctcaaatggcatgtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 205 tttttttttttttttttctgaggaaactggataagggacttgctctcaaatggcaagtta 264

                                                                       
Query: 65  gtagagccctgggaatgccctgggcactgctgtaccatgtgattcagaacacttaaggcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagagccctgggaatgccctgggcactgctgtaccatgtgattcagaacacttaaggcc 324

                                                                       
Query: 125 tcaggaactcagcctcaatgtgagggttgcctttggaggattacagaatgcttcagggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaggaactcagcctcaatgtgagggttgcctttggaggattacagaatgcttcagggga 384

                                                                       
Query: 185 tcactgaggaaagatgaggctgatgggggagacagtgctgggttagcatagcaacagctt 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 tcactgaggaaagatgaggctgatgggggagacagtgctgggttagcacagcaacagctt 444

                                                                       
Query: 245 ctgactccctgaaatggccacctctctccacagggctatgaagggtccctgatcaagctc 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaccccctgaaatggccacctctctccacagggctatgaagggtccctgatcaagctc 504

                                                                       
Query: 305 acctcaagacaggtaatttctcttctaggtttttcctctcagctcaggctaactgctggc 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 acctcaagacaggtaatttctcttctaggtttttcctctcagctcaggttaactgctggc 564

                                                                       
Query: 365 atggaactgaaacgtttgtcctactgcttgaaggcatctgaaggtggagacccactcctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggaactgaaacgtttgtcctactgcttgaaggcatctgaaggtggagacccactcctt 624

                          
Query: 425 gctgtcttgcttctg 439
           |||||||||||||||
Sbjct: 625 gctgtcttgcttctg 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_h12.g1 MSMg01no441_h12.g1 CHROMAT_FILE:
MSMg01no441_h12.g1 PHD_FILE: MSMg01no441_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:15 2005
         (169 letters)



>mm_chr9_65656947_65657515
          Length = 569

 Score =  306 bits (158), Expect = 6e-88
 Identities = 166/169 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacttaatcttgatctatttcccatgtgttggaattacaggtttttaaagtagaaaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attcacttaatcctgatctatttcccatgtgttggaattacaggtttttaaagtagaaaa 267

                                                                       
Query: 61  atgtagatttttctttaggttttgttgttgttgtttttattttttgttttgttggtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgtagatttttctttaggttttgttgttgttgtttttattttttgttttgttggtatat 207

                                                            
Query: 121 aaactaacaggntttctctgtgtaggcctggctgtcattggccaggctg 169
           ||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 206 aaactaacagggtttctctgtgtagccctggctgtcattggccaggctg 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)