Query= MSMg01no441_j08.b1 MSMg01no441_j08.b1 CHROMAT_FILE:
MSMg01no441_j08.b1 PHD_FILE: MSMg01no441_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:25 2005
(477 letters)
>mm_chr9_35480406_35481282
Length = 877
Score = 893 bits (462), Expect = 0.0
Identities = 471/474 (99%)
Strand = Plus / Minus
Query: 4 ggaattcattttatgccaatgtataaagttgtgtgaattatttgtcggtcacttccagat 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggaattcattttaggctaatgtataaagttgtgtgaattatttgtcggtcacttccagat 589
Query: 64 taacaggttgctggcccaaatataactattaaaaccatatatgtaaaaatgcctgtgtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 taacaggttgctggcccaaatataactattaaaaccatatatgtaaaaatgcctgtgtaa 529
Query: 124 ctattgaaacacatgaaggaagagcatctgatgattaaagaataaatgttctcatgtgag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctattgaaacacatgaaggaagagcatctgatgattaaagaataaatgttctcatgtgag 469
Query: 184 gaaagtttttcagtcaggttttacttctagtttgcccaaattgccaagtaaaattgccca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaaagtttttcagtcaggttttacttctagtttgcccaaattgccaagtaaaattgccca 409
Query: 244 tggtcagtaaagaaaagaaaatatcctcaagaatataacactttcactcaggttgtataa 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 408 tggtcagtaaagaaaagaaaatatcctcaagaatagaacactttcactcaggttgtataa 349
Query: 304 agtcatggcaacaaagagtctcctctttcatgaataaagcacccagactctgcatcctct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agtcatggcaacaaagagtctcctctttcatgaataaagcacccagactctgcatcctct 289
Query: 364 gactcaaaaaaactaaaattcaacctcattggcttttccaacctgctggtctattttgaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gactcaaaaaaactaaaattcaacctcattggcttttccaacctgctggtctattttgaa 229
Query: 424 aaaacatcgccatgcattttttagttttggtttggtttggtttggtttggtttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaaacatcgccatgcattttttagttttggtttggtttggtttggtttggtttg 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_j08.g1 MSMg01no441_j08.g1 CHROMAT_FILE:
MSMg01no441_j08.g1 PHD_FILE: MSMg01no441_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:25 2005
(486 letters)
>mm_chr9_35332077_35332963
Length = 887
Score = 795 bits (411), Expect = 0.0
Identities = 471/507 (92%), Gaps = 28/507 (5%)
Strand = Plus / Plus
Query: 5 agctgggaagaattcaaactggttttacatttacttattcaaaga-ttttttttcatttt 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 184 agctgggaagaattcaaactggttttacatttacttattcaaagatttttttttcatttt 243
Query: 64 aaattgtgtttgtgtgtatgtgtgtgctcatggtgcatgcatgtatgtacatgtgccaca 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaattgtgttagtgtgtatgtgtgtgctcatggtgcatgcatgtatgtacatgtgccaca 303
Query: 124 catgaatgcaggcaccctcaaaggttagaagtgtcagcttcccctagaactggagatata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catgaatgcaggcaccctcaaaggttagaagtgtcagcttcccctagaactggagatata 363
Query: 184 gagaattgtgaactgcctaatataggtgctaggaactgaacctggctcctatggaatagt 243
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 364 gagaattgtgaactgcctattataggtgctaggaactgaacctggctcctatggaagagc 423
Query: 244 aagaagcgctcttacttaacagctgagccacacccaaatatatcgagtgtgtgtgtgtgt 303
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 424 aagaagcgcccttacttaacagctgagccacacccaaatatatcgtgtgtgtgtgtgtgt 483
Query: 304 gtgtgtgtgtgtgtgtgtg--------------------catgaacctgcaccatggcat 343
||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 484 gtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgcatgagcctgcaccatggcat 543
Query: 344 gtgaagattagaggactaaactatactaactataataaaactacaatattacta----tg 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 544 gtgaagattagaggactaaactatactaactataataaaactacaatattactaactatg 603
Query: 400 tctgcgtttaaaaagtagttgagctttctacctcctcttattttaaagagatgcaagatt 459
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 604 tctgcgtttaaaaagtagttgagctttctacctcct---attttaaagagatgcaagatt 660
Query: 460 taaatgtaacatttaaaacattttgtg 486
||||||||| |||||||||||||||||
Sbjct: 661 taaatgtaatatttaaaacattttgtg 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
