BAC Information

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BAC

Clone NameMSMg01-441K03
Chromosome9 (Build37)
Map Location 24,592,191 - 24,592,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441K03.T7 (MSMg01no441_k03.b1)MSMg01-441K03.TJ (MSMg01no441_k03.g1)
ACCAG531469AG531470
length739751
length of high quality
(start - end)
237 (78 - 314)246 (79 - 324)
definitionCHROMAT_FILE: MSMg01no441_k03.b1 PHD_FILE: MSMg01no441_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:29 2005CHROMAT_FILE: MSMg01no441_k03.g1 PHD_FILE: MSMg01no441_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCGATATGGAGGCG
CGGAATTCACATCATTCTAACATTCGAAGGTAGAGGGACAGTGAAGAACA
AGTTAATGGGAAGAGGGTATTTTCCACCCATAACGAGTGTCCAGCAGTGA
CAACCACTCACGGAGTCATTAGATTTGGAGATTAAGGAGGCAATTCGTGA
TTTTCCAGAGAACATTTGATTAGAGTCTCTGGGACTGACACCAGATTGTA
TTATAACACATGAGGCCCCGAGGCTGACAGTCTAATGGGAGTGGCTTGTG
TGAGGCTTATCTCTGATTATTTTTATGCCAAGCACTGGTCACCCTCAAAG
GCCAAAGGAAGGTATTAGGGTTGAAATGCAGAAAGCCATGCAGACCCCTC
AGAGTCATTCAAATGTTCCTTTGAGAGCTCCTGCTGCCCCACAACTTGAT
GACAGTCTGTCAGCACCTTAGGTATCAACCTCTGTGGCAGGTTCAGGCTG
CCCACCTTTCACTAAATAGCAGGCAGTACCATAGACAAAGCTTCCTGATG
CACAACTCTAGTATGTTGTAGCATAATTAGGTTTCATTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCGCGCTCCCTCTCTCGCCCACAATACTTTTTT
TTTTTTCTGCACCGTCAGGCTTCACATATACATTTATTAATGCGCCGCGC
TTTTCTCCTATCTTTTTCCCCCCTAATGCCGGCCCCCTA
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACAAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTG
ATGGATTTTCCTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGTTTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGTTTTGATATTCATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAAT
AGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGT
GAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAG
AACTCTGTACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACT
ATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGT
CAACTTGATCCTGACTCAATTTTGGTACCTGGTATCGGTCCAGAAATTTG
TCCATTTCGCCTATTTTTTCTAGTTTCCGTGAGTATACCCTTTTGTACAA
AGATCTGATGCTGTTCTGCATTCCCCCCATATCTCCTCCTTCTTCTTCCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_k03.b1 MSMg01no441_k03.b1 CHROMAT_FILE:
MSMg01no441_k03.b1 PHD_FILE: MSMg01no441_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:29 2005
         (237 letters)



>mm_chr9_24591991_24592630
          Length = 640

 Score =  383 bits (198), Expect = e-111
 Identities = 229/242 (94%), Gaps = 7/242 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtagagggacagtgaagaa---caagttaatgggaagagggtattttcca--cccata 55
           |||||||||||||||||||||   ||||||||||||||||||| ||||  ||  ||||||
Sbjct: 201 aggtagagggacagtgaagaagaacaagttaatgggaagagggcattt--caaacccata 258

                                                                       
Query: 56  acgagtgtccagcagtgacaaccactcacggagtcattagatttggagattaaggaggca 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acgagtgtccagcagtgacaaccactcacggagtcattagatttggagattaaggaggca 318

                                                                       
Query: 116 attcgtgattttccagagaacatttgattagagtctctgggactgacaccagattgtatt 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 319 attcgtgattttccagagaacatttgattagagtctctgggactgacaccagattgcagg 378

                                                                       
Query: 176 ataacacatgaggccccgaggctgacagtctaatgggagtggcttgtgtgaggcttatct 235
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 agaacacatgaggccccgaggctgacaatctaatgggagtggcttgtgtgaggcttatct 438

             
Query: 236 ct 237
           ||
Sbjct: 439 ct 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 640
Length adjustment: 9
Effective length of query: 228
Effective length of database: 631
Effective search space:   143868
Effective search space used:   143868
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)