Query= MSMg01no441_m14.b1 MSMg01no441_m14.b1 CHROMAT_FILE:
MSMg01no441_m14.b1 PHD_FILE: MSMg01no441_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:42 2005
(246 letters)
>mm_chr9_87294305_87294953
Length = 649
Score = 451 bits (233), Expect = e-131
Identities = 243/248 (97%), Gaps = 3/248 (1%)
Strand = Plus / Minus
Query: 1 tgttggntttttttttcctggacttgcaaattgaaactttaatggcaagcttttcctgtt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgttggttttttttttcctggacttgcaaattgaaactttaatggcaagcttttcctgtt 389
Query: 61 cctgcctagcaaatgtgttttttgaaaaggcccagggattt---tttttttctcaaatcc 117
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 cctgcctagcaaatgtgttttttgaaaaggcccagggatttttctttttttctcaaatcc 329
Query: 118 tctctgtaagaccactgccaataattaggtcatgctagcatttccaggatccagtcagtc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctctgtaagaccactgccaataattaggtcatgctagcatttccaggatccagtcagtc 269
Query: 178 acaatggctctcaaaacttgcttatatttgtataatatctagtatacatttgattgtgta 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 268 acaatggctctcaaaacttgcttatatttgtataatatgtagtatacatttgattgtgta 209
Query: 238 tataattg 245
||||||||
Sbjct: 208 tataattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 649
Length adjustment: 9
Effective length of query: 237
Effective length of database: 640
Effective search space: 151680
Effective search space used: 151680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no441_m14.g1 MSMg01no441_m14.g1 CHROMAT_FILE:
MSMg01no441_m14.g1 PHD_FILE: MSMg01no441_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:42 2005
(556 letters)
>mm_chr9_87122116_87123071
Length = 956
Score = 948 bits (490), Expect = 0.0
Identities = 542/562 (96%), Gaps = 6/562 (1%)
Strand = Plus / Plus
Query: 1 ctcagctacccacccgcatttgtacgtacgcatgagcttttaactactgagatgaagcta 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 196 ctcagctacccacccgcatttgtacgtacgcatgagctgttaactactgagatgaagcta 255
Query: 61 cgatgctaaatctgtcgttacggcacagcacaacaaaaccaataccaac-----aggaca 115
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 256 cgatgctaaatctgtcgttacggcacagcacaacaaaaccaataccaactgcgcaggaca 315
Query: 116 cacagggtatgatgtacctgcttacgttttttctgttctcttgaggcagggtctaatgta 175
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 316 cacagggtatgatgtacctgcttacattttttctgttctcttgaggcagggtctaatgta 375
Query: 176 tcccaggctggcctctcgctcctgttttagtagaggatgatcctcaactcctgacccttc 235
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcccaggctggcctctcgctcctattttagtagaggatgatcctcaactcctgacccttc 435
Query: 236 taactctgtttgctgagattacaagcatgtgtaattctaatctcagataattttaatgca 295
|||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 436 taactctgcgtgctgagattacaagcatgtgcaattctaatttcagataattttaatgca 495
Query: 296 gcacagtaatttttagccacaatttcttattaaatcaacatgtacttgaagtatggaaat 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 gcacagtaatttttagccacaatttcttattaaatcaatatgtacttgaagtatggaaat 555
Query: 356 tttttttaaaataaatctctgtaagactaaggttactataatttataacaagaaatcatg 415
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 556 ttttttaaaaataaatctctgtaagactaaggttactataatttataacaagaaaccatg 615
Query: 416 gagtataaatactaaaaagcataaaataaccatagcatagaaaaattttaaaataaaaag 475
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 616 gagtataaatactaaaaagcataaaataaccacagcatagaaaaaatttaaaacaaaaag 675
Query: 476 aaaaaaaa-tcaccagaattttaaaataaagcatttaccatttaatgaactgaaacaaat 534
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaaaaaaaatcaccagaattttaaaataaagcatttaccatttaatgaactgaaacaaat 735
Query: 535 taggtaagtattaaaaagtcag 556
||||||||||||||||||||||
Sbjct: 736 taggtaagtattaaaaagtcag 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
