Query= MSMg01no442_h09.b1 MSMg01no442_h09.b1 CHROMAT_FILE:
MSMg01no442_h09.b1 PHD_FILE: MSMg01no442_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:38 2005
(285 letters)
>mm_chr9_122083857_122084538
Length = 682
Score = 474 bits (245), Expect = e-138
Identities = 274/285 (96%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 1 cctgcctcctgggttcccacagagtctaagctagggcagcagtcacaggaacatagctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cctgcctcctgggttcccacagagtctaagctagggcagcagtcacaggaacatagctga 423
Query: 61 ttgtgaatcagagactcctgggttaccctgtctaaatctatcggctgcccatctgcccac 120
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 422 ttgtgaatcagagactcctgggttaccccgtctaaatctatcggct---catctgcccac 366
Query: 121 aagtggtcccagctgctgcctgtgcaagttcagcgggcttccctgaactggtgactgctg 180
|||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 365 aagtggtcccagctgcggcctgtgcaagttcagcaggcttccctgaactggcgactgctg 306
Query: 181 tttccacatgccccacttctgccaccagagagaacaggaccctcccctgggcctgtggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttccacatgccccacttctgccaccagagagaacaggaccctcccctgggcctgtggcc 246
Query: 241 acaggagaatatttttatgggatagaatgcaccaggtgacggccg 285
||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 245 acaggagaagatgggtatgggatagaatgcaccaggtgacggccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 682
Length adjustment: 9
Effective length of query: 276
Effective length of database: 673
Effective search space: 185748
Effective search space used: 185748
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no442_h09.g1 MSMg01no442_h09.g1 CHROMAT_FILE:
MSMg01no442_h09.g1 PHD_FILE: MSMg01no442_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:38 2005
(286 letters)
>mm_chr9_121892359_121893044
Length = 686
Score = 509 bits (263), Expect = e-148
Identities = 280/291 (96%), Gaps = 10/291 (3%)
Strand = Plus / Plus
Query: 1 ttcggcctcattggagtagcagagccacttgaagcggcagatgcggtccgtgtgggtgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcggcctcattggagtagcagagccacttgaagcggcagatgcggtccgtgtgggtgcg 260
Query: 61 gcctgtgcacaccatgtgggtgccgccctccatgaggatctgcagggccttcgggtagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgtgcacaccatgtgggtgccgccctccatgaggatctgcagggccttcgggtagtc 320
Query: 121 gatcttcagtcctaggactggatccagggactgctgtccaagggccagctcctcctctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcttcagtcctaggactggatccagggactgctgtccaagggccagctcctcctctag 380
Query: 181 cgtggccgcatgctcccgcaaccgcacatgcttccacaggaccgcagccagcactgatac 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtggccgcatgctcccgcaaccgaacatgcttccacaggaccgcagccagcactgatac 440
Query: 241 cagga-----tttttttgaatacggcagagaggtgcatcctatcgccacca 286
||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 441 caggagggcgtt-----gaatacggcagagaggtgcatcctatcgccacca 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
