BAC Information

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BAC

Clone NameMSMg01-442L03
Chromosome9 (Build37)
Map Location 14,750,177 - 14,750,411
singlet/doubletsinglet
Overlap genenone
Upstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4
Downstream genePanx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442L03.T7 (MSMg01no442_l03.b1)MSMg01-442L03.TJ (MSMg01no442_l03.g1)
ACCAG532279AG532280
length839790
length of high quality
(start - end)
236 (72 - 307)417 (80 - 496)
definitionCHROMAT_FILE: MSMg01no442_l03.b1 PHD_FILE: MSMg01no442_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:58 2005CHROMAT_FILE: MSMg01no442_l03.g1 PHD_FILE: MSMg01no442_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAGAGGATC
CGCGGAATTCACAGGTTGCAACACGTTTCCTAAATATCAATTTCTCCCTG
GAGTGAGTTTTGTTTGTAGCACAATACTGCTCACAGCAGTGTAGCACGTT
TTCCATCTGTGGGGCTCATTATTTTAAGACAAGTGTCGGTGTTGGGATGG
ACGCTATGTATACACCCTGCCCCAACCTACCTGGCTTTGCCAATTTTATC
TCCTAGATAAAGAATTCCTCCTAAAGTATGACCGGGTGAAGGTACAGTGC
TGATCAATACAGCTCTCTAGAACTATTTTTCTTCCAGGACAAAAAATCAA
CTGTAGGTTTGCTTAGCATCGTTCCCCAGTTGGGTGAACCACCTTTAGCT
TATTTATTTATTTCTTCCTCCTTTCCTGTCACCCTTCCTTTCCTTTACCT
CTTATCTTCTTCCCCTCTTTCTTTTTCTCCTTTATTTTTTCTCCTTTTAT
CCCTCATCTTTGTTTTCATCCCTTCTTTTTTTTTTTTCTCTCCTCTTTTT
CTTTTTTTTCTCTCTCTGTCTCTTTCCTGCCCTCTCTTCTCTCCTCCCTT
TTTTTTTTTCTTCTTTCTTCCCGCTCCCTTTTTCTTCCTACCCTCCCTTT
TTTTCCCCTCCTTTCCTTTCTCCCTTTCTCTTTTTTCTTTCTCCTCCCCC
CCTTTTATTTCTCTCTCCTTCTTTTTCCCTTTTTTCGCTTTTTTCTCCCA
CCCCTTTTTTCTCTCCCTTTTTTTCCCTCTTTTTTTTTTTTCCTCTCCCT
CTTTTTTATTATCTTTTCTCCCTCTTTCTCATTCCCCTN
TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGACTACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCGCTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCATCAGAGGAATGGATACAGA
AAATGTGGTACATCTACACACTGGAGTACTACTCCGCTCACACAAAGAAT
GATTTTTTGACCTTTCTAGCCTAATGGCAGGGACCTGTATGGTCCCCCCC
TTGAGTGTGGTTATATCTTTCTCTAATGCAACTTCTTTATTATCTGTTCT
CCTCGGTTTATCGGGGTTTCAATTCACTACTTCTATCGCTACCCTCGATT
ATCCTAACCCTACTTTTTTTTACTCCCCCCACCGCTCCCTTAAACTTATG
CCATTTCCTCGTTGCGTCCCTCTCTTCCTCCCCCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_l03.b1 MSMg01no442_l03.b1 CHROMAT_FILE:
MSMg01no442_l03.b1 PHD_FILE: MSMg01no442_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:58 2005
         (236 letters)



>mm_chr9_14749977_14750611
          Length = 635

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgtttcctaaatatcaatttctccctggagtgagttttgtttgtagcacaatactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cacgtttcctaaatatcaatttctccctggagtgagttttgtttgtagcacaatactgct 376

                                                                       
Query: 61  cacagcagtgtagcacgttttccatctgtggggctcattattttaagacaagtgtcggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cacagcagtgtagcacgttttccatctgtggggctcattattttaagacaagtgtcggtg 316

                                                                       
Query: 121 ttgggatggacgctatgtatacaccctgccccaacctacctggctttgccaattttatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgggatggacgctatgtatacaccctgccccaacctacctggctttgccaattttatct 256

                                                                   
Query: 181 cctagataaagaattcctcctaaagtatgaccgggtgaaggtacagtgctgatcaa 236
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 cctagataaagaattcctcctaaagtatgaccggg-gaaggtacagtgctgatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)