BAC Information

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BAC

Clone NameMSMg01-443A05
Chromosome9 (Build37)
Map Location 29,943,389 - 29,943,597
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443A05.T7 (MSMg01no443_a05.b1)MSMg01-443A05.TJ (MSMg01no443_a05.g1)
ACCAG532521AG532522
length709795
length of high quality
(start - end)
59 (257 - 315)209 (84 - 292)
definitionCHROMAT_FILE: MSMg01no443_a05.b1 PHD_FILE: MSMg01no443_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:28 2005CHROMAT_FILE: MSMg01no443_a05.g1 PHD_FILE: MSMg01no443_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCATCTATAATTGCGGCGCTAAACGACTCACATATTTCGAACTCGGCG
GAANNCNNNGGGGTAACAATAAAAGCGNGGGNTACCCAGGGACTAAGCTT
GGCTCCAATCTGCACCGTCTTCCCGTAACCCATGCGCCTCGCAGATCTGC
TGACTCCATCAGAAAACAAACAAGCTCTTGCTCCTGTTCGTGGCCGGCAG
AAACTGACCTGGTATAGAAATCAGAGCCAACATCTCAGCAATCTAACAAA
TGTTTCCCCATGACTGCTGTTTATTTGCTGGGGATGTGTTTCCCTCGACC
CCAGGAAGGAGAGAGCTTTCGTTTATTGCTGAACGACTGCTTGGGAAGGA
AAGCAAAGTTTGTATAACCCCCCAGTTCCATCCTTGTCTTTGAAGGAGTC
TCATCTGTGACTAACTGGNGCTTAACACCTTCCAAGTCCATCTTCATCAC
ATTCCTTCTTGACCTTCACTCAAAGGCTTCCTGAAGCTTTCTTGCTAGAA
ATCTTACAGATGGGTCAATTACCAGTTATTATAACTCTTTATTCCCTCCG
CCCGCAATGCCCTCCCTGGTTAAACATCTCACTGCACACTGAAGATGCTT
TACCGGCCACTTTACTTTTTGCTTTTCCTGCCCCCAAACCGTTCGCATCT
TTGTCCCTGCATCGCCTATGCCACCCGCATCTGTGCACTATCCTTCTTTT
TTCTTCTCN
ATTTTTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAGAAAAACCTAGCTTAGGAATCAATGCA
CATTGATTTTTGGACCTCTGCATGTTCTGCCCATGTACACTATCAAGTGA
TGAAAGCTGTATTTTGTTGGGCTTCTAGTGGGGATAAGCAGGTGCCATTT
CTACCAGTTTGCTAAGAGTAGATTGCTAAGAGAACTGAAAACAACAAGGA
AAGAAGGAATTTAGAGAGAGAAGAAGGGAGGGAAGGAAGGAGGCTAGAAT
TACCCCCCCTCACCACTCCCCACATTTTTTATATTTTTTCCATCTCCCAC
CAAAAACCGCGCCATCCCCTTTTTTTTTTTTCTCCCCCCCCTTTTTTTTC
TTCCTTTCCCCTTCCATTTTTTTCCCTTTTCTCTCTTTTCTTTCCCCCCC
CCCCTCTCCTTTTTTTCTCTTTTTTTTTTCCCCTTTTTTTCCCCTTTTAT
CCCCCCCCTTTTTCCCTCCCCTTTACCCATCTGTCTCCTCCTCCGTCTCC
TTTTTTTTCCTCTTTTATTGAATTTGGTGTTTTTTCTTTTTTCCCCCCCT
CTTCCTTATTCTCTCCTCCTCTCATTACCACATATCCTCTACTCTTTTTT
CCATTTTTTTCTTCCCCCCCTCCTCGCACTTTTTATTTATTTTACCCTCC
TCCTTCTTTTGTCCCTCCCCCCTTTTTGTTTTTTTTTTCCCCTTTTATCC
CTTTTTCCCCTTTATTTTCTCCCTGTTTAACACTTCTCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_a05.g1 MSMg01no443_a05.g1 CHROMAT_FILE:
MSMg01no443_a05.g1 PHD_FILE: MSMg01no443_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:28 2005
         (209 letters)



>mm_chr9_29943236_29943844
          Length = 609

 Score =  350 bits (181), Expect = e-101
 Identities = 202/209 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttaggaatcaatgcacattgatttttggacctctgcatgttctgcccatgtacactat 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 362 gcttaggaatcaatgcacattgatttttggacctctgcatgggctgcccatgtacactat 303

                                                                       
Query: 61  caagtgatgaaagctgtattttgttgggcttctagtggggataagcaggtgccatttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caagtgatgaaagctgtattttgttgggcttctagtggggataagcaggtgccatttcta 243

                                                                       
Query: 121 ccagtttgctaagagtagattgctaagagaactgaaaacaacaaggaaagaaggaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 242 ccagtttgctaagagtagattgctaagagaactgaaaacaacaaggaaagaaggaaggga 183

                                        
Query: 181 gagagagaagaagggagggaaggaaggag 209
           | ||||||||||||||||| |||||||||
Sbjct: 182 gggagagaagaagggaggggaggaaggag 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)